Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FRZ06_RS00880 Genome accession   NZ_CP042469
Coordinates   221185..223041 (+) Length   618 a.a.
NCBI ID   WP_419823018.1    Uniprot ID   -
Organism   Anoxybacterium hadale strain MT110     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 216185..228041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRZ06_RS00870 (FRZ06_00865) - 218639..219073 (+) 435 WP_419823016.1 MarR family winged helix-turn-helix transcriptional regulator -
  FRZ06_RS00875 (FRZ06_00870) rcrP 219389..221188 (+) 1800 WP_419823017.1 ABC transporter ATP-binding protein Regulator
  FRZ06_RS00880 (FRZ06_00875) rcrQ 221185..223041 (+) 1857 WP_419823018.1 ABC transporter ATP-binding protein Regulator
  FRZ06_RS00885 (FRZ06_00880) - 223256..223753 (-) 498 WP_419823019.1 amidase domain-containing protein -
  FRZ06_RS00890 (FRZ06_00885) - 223884..224942 (-) 1059 WP_419823020.1 acyltransferase family protein -
  FRZ06_RS00895 - 224960..225517 (-) 558 WP_419823021.1 TetR family transcriptional regulator -
  FRZ06_RS00900 (FRZ06_00895) - 225715..226419 (+) 705 WP_419823022.1 MBL fold metallo-hydrolase -
  FRZ06_RS00905 (FRZ06_00900) - 226550..227110 (+) 561 WP_419823023.1 DNA-3-methyladenine glycosylase I -
  FRZ06_RS00910 (FRZ06_00905) - 227172..227648 (-) 477 WP_419823024.1 4Fe-4S dicluster domain-containing protein -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 67755.88 Da        Isoelectric Point: 8.9812

>NTDB_id=378052 FRZ06_RS00880 WP_419823018.1 221185..223041(+) (rcrQ) [Anoxybacterium hadale strain MT110]
MSERKETRPAGGPMGGPRGMNGPVEKPKNFKSTMIKLMRYCKSWLPVIAVALIAAIAGTIFQIVGPDQLKDLTNVIGEGL
PVLVNGVPVAGNIDLARVSSIAWILVFLYVGSMILNFLQGYIMATATQKISRKMRSDISQKINRLPLKYFDKTSHGDILS
RVTNDVDVIGQTLNQSVGTLITSVTMFGGSLIMMFYSNWILALTAVGSSAIGIVLMILIMGKSQKYFTAQQRELGSINGH
IEEIYTGHNVVKVYNGSRGAKKTFEEINGKLYQSAWKSQFLSGLMMPLMGFVGNFGYVAVCVVGAILAVNGVISFGIIVA
FMLYIRLFTQPLSQVAQALNNLQRTAAAGERVFEFLGEEELSEEIGKKKGLEFIRGDVEFKNVKFGYVPEKTIIHNFSTK
IKAGEKVAIVGPTGAGKTTIVNLLMRFYDLDSGEILLDGVPISQVPRENVHEQFSMVLQDTWLFEGTIRENIVYSKEGVT
AEEVAAACKTVGLHHFIKTLPDGYDTVLNDKASLSEGQKQLITIARAMIQSAPLLILDEATSSVDTRTERMVQKAMDQLT
KGRTSFVIAHRLSTIKNADLILVMKEGDIIESGTHKELLEKGGFYAELYNSQFEAAVS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=378052 FRZ06_RS00880 WP_419823018.1 221185..223041(+) (rcrQ) [Anoxybacterium hadale strain MT110]
ATGAGCGAGAGAAAAGAAACCAGACCTGCGGGTGGTCCAATGGGAGGACCGAGAGGGATGAACGGCCCCGTTGAAAAACC
AAAGAACTTTAAGTCTACCATGATAAAATTGATGCGATACTGTAAAAGCTGGCTTCCTGTCATCGCAGTGGCATTAATTG
CAGCCATTGCAGGAACCATCTTTCAAATCGTCGGTCCGGATCAACTAAAGGATCTGACCAACGTGATCGGCGAGGGACTG
CCGGTGCTGGTAAATGGCGTACCCGTTGCCGGAAACATTGATCTTGCTCGGGTGTCGTCCATTGCATGGATCCTTGTATT
TCTGTATGTGGGATCCATGATCTTGAACTTTCTACAGGGCTATATCATGGCTACGGCCACACAAAAAATATCTCGGAAAA
TGCGTTCGGATATTTCTCAGAAAATTAACCGTCTCCCTTTGAAATATTTTGATAAAACAAGCCATGGAGATATTTTGAGC
CGTGTGACCAATGACGTGGATGTCATCGGTCAGACGCTGAACCAGAGCGTTGGAACGCTGATTACTTCTGTAACCATGTT
CGGGGGCTCTCTGATCATGATGTTCTATAGTAACTGGATCTTAGCACTTACCGCAGTGGGATCCAGTGCCATCGGTATCG
TACTGATGATCCTGATCATGGGGAAATCTCAGAAATATTTTACGGCGCAGCAGAGAGAGCTGGGAAGCATCAACGGTCAT
ATTGAGGAAATCTACACAGGCCATAATGTGGTGAAGGTATATAACGGAAGCCGAGGCGCAAAGAAGACATTTGAAGAAAT
CAATGGAAAGCTCTATCAAAGTGCCTGGAAATCTCAGTTTTTATCTGGACTGATGATGCCGCTCATGGGATTTGTAGGAA
ATTTTGGTTATGTCGCAGTCTGCGTTGTAGGTGCGATTCTGGCCGTAAATGGTGTCATTTCATTTGGTATCATTGTTGCT
TTTATGCTCTATATCCGGCTGTTTACCCAGCCTTTGTCACAGGTTGCACAGGCGCTGAACAATCTGCAAAGAACTGCAGC
CGCAGGTGAGCGTGTCTTTGAGTTCTTGGGTGAGGAGGAGCTGAGTGAAGAAATAGGAAAAAAGAAAGGGTTGGAATTCA
TTCGGGGCGATGTGGAATTTAAAAATGTAAAATTTGGCTATGTGCCTGAAAAAACCATTATCCATAATTTTTCCACTAAA
ATCAAGGCGGGAGAGAAGGTTGCCATCGTGGGACCAACCGGCGCAGGTAAAACGACCATTGTGAACCTTCTTATGCGTTT
TTACGATCTGGATTCCGGTGAAATCCTTTTGGACGGAGTGCCTATCAGTCAGGTTCCCAGGGAGAATGTCCATGAACAGT
TCAGTATGGTTCTGCAGGACACTTGGCTCTTCGAAGGCACCATTCGGGAGAATATTGTTTATAGCAAGGAGGGCGTTACA
GCAGAGGAAGTGGCCGCAGCCTGCAAGACCGTGGGGCTCCATCACTTTATCAAAACATTGCCGGATGGTTATGATACCGT
TCTGAACGACAAAGCGAGTTTGTCCGAGGGACAAAAGCAACTGATTACCATTGCCAGGGCAATGATTCAAAGCGCGCCGC
TGCTCATTCTGGATGAAGCCACCAGCTCAGTAGATACCAGAACGGAACGAATGGTTCAGAAAGCAATGGATCAACTGACA
AAGGGAAGAACCTCATTCGTCATTGCCCATAGACTTTCTACCATAAAAAATGCCGATCTGATTTTGGTCATGAAGGAAGG
CGATATCATTGAAAGTGGAACCCATAAGGAGCTCCTTGAGAAGGGTGGCTTTTACGCAGAACTCTACAACAGTCAGTTTG
AGGCGGCAGTATCATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(395-542)

ABC transporter transmembrane region (ABC_membrane)

(50-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.932

95.146

0.523

Multiple sequence alignment