Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FRZ06_RS00875 Genome accession   NZ_CP042469
Coordinates   219389..221188 (+) Length   599 a.a.
NCBI ID   WP_419823017.1    Uniprot ID   -
Organism   Anoxybacterium hadale strain MT110     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 214389..226188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRZ06_RS00865 (FRZ06_00860) - 215541..218492 (+) 2952 WP_419823015.1 AAA domain-containing protein -
  FRZ06_RS00870 (FRZ06_00865) - 218639..219073 (+) 435 WP_419823016.1 MarR family winged helix-turn-helix transcriptional regulator -
  FRZ06_RS00875 (FRZ06_00870) rcrP 219389..221188 (+) 1800 WP_419823017.1 ABC transporter ATP-binding protein Regulator
  FRZ06_RS00880 (FRZ06_00875) rcrQ 221185..223041 (+) 1857 WP_419823018.1 ABC transporter ATP-binding protein Regulator
  FRZ06_RS00885 (FRZ06_00880) - 223256..223753 (-) 498 WP_419823019.1 amidase domain-containing protein -
  FRZ06_RS00890 (FRZ06_00885) - 223884..224942 (-) 1059 WP_419823020.1 acyltransferase family protein -
  FRZ06_RS00895 - 224960..225517 (-) 558 WP_419823021.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 65888.52 Da        Isoelectric Point: 4.8924

>NTDB_id=378051 FRZ06_RS00875 WP_419823017.1 219389..221188(+) (rcrP) [Anoxybacterium hadale strain MT110]
MLKILKRLNRQEWLQAGISLFFIVAQVWLDLKLPDYMAEITRLTQTPGSDMADIWIAGGFMVLCALGSFAAAVVVGYFAS
RIAASFSMRLRSLLFNRVDSFSMEEISRFSTASLITRSTNDVTQIQVLITMGLQMLVKAPIMAVWAVTKISGKGLEWTAA
TGITVLILVVMIGILMALVLPKFKKMQILTDNLNRVTMENLSGLRVVRAYNAEGYQEDKFEEANDDLTSAQLYTSRGMAI
MLPVMFMLMSGLTLAVYWIGAYLINGAGIMDKLTIFSNMVVFSAYAMQIIMSFMMVVMLFVLLPRAAVSATRINEVLDTQ
PSMKEGTLTMGIPEAEGQITFKNVSFRYPGAEDDVLHDISFSVNKGETVAFIGSTGSGKSTLINLVPRFIDATEGEVLVG
GVNVKEYAQEALNNKIGYVPQKAVMFKGTVSTNVAFGDSGRGEMSEWEARGNDRGEASESEIRRAVRIAQGSDFVEQMEG
GYEAEIAQGGSNVSGGQKQRLAIARAVCRNPEIFIFDDSFSALDYKTDRMLRLELKRETAGATSMIVAQRIGTILDADQI
IVLEEGRIVGKGTHRELLSSCEVYREIAMSQLSEEELAI

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=378051 FRZ06_RS00875 WP_419823017.1 219389..221188(+) (rcrP) [Anoxybacterium hadale strain MT110]
ATGTTAAAAATTTTGAAACGCCTGAACCGGCAGGAATGGCTTCAGGCAGGGATTAGTTTATTTTTTATAGTTGCCCAGGT
TTGGCTCGACTTGAAATTGCCGGACTATATGGCTGAAATTACGAGGCTGACCCAAACCCCGGGCAGTGATATGGCTGATA
TCTGGATTGCAGGAGGATTTATGGTTTTATGTGCTCTGGGAAGCTTTGCAGCAGCAGTTGTCGTCGGGTACTTCGCATCC
CGCATTGCCGCATCATTTTCCATGAGACTGCGGAGCCTCCTTTTTAATCGAGTGGATTCCTTTTCCATGGAGGAAATTAG
CAGATTCTCCACTGCCAGTTTGATCACTCGTTCCACAAACGATGTGACGCAGATACAGGTCCTGATCACTATGGGTCTTC
AGATGCTTGTCAAGGCGCCGATTATGGCGGTTTGGGCAGTGACAAAGATTTCGGGAAAAGGCCTGGAGTGGACGGCTGCC
ACAGGAATTACTGTGCTCATTCTGGTTGTAATGATTGGGATTCTCATGGCGCTGGTTCTGCCGAAATTCAAAAAAATGCA
AATTCTTACCGATAACCTGAATCGTGTAACCATGGAAAACTTATCGGGATTGCGTGTTGTCAGGGCATATAATGCCGAGG
GGTATCAGGAAGACAAATTTGAAGAGGCCAACGATGATCTGACGTCAGCCCAGCTTTATACCAGCAGGGGGATGGCCATT
ATGCTTCCGGTGATGTTTATGCTGATGAGCGGATTGACTCTCGCGGTCTACTGGATTGGTGCCTACCTGATTAACGGAGC
GGGAATTATGGATAAGCTTACGATATTCTCCAACATGGTCGTATTCTCCGCTTATGCAATGCAGATTATCATGTCCTTTA
TGATGGTTGTCATGCTCTTTGTGCTGCTTCCAAGGGCGGCAGTGTCCGCAACTCGTATCAACGAAGTCCTTGATACGCAG
CCGTCCATGAAAGAAGGGACACTTACCATGGGAATCCCGGAGGCGGAAGGGCAGATTACTTTCAAAAATGTCAGTTTTCG
ATATCCGGGGGCAGAAGATGATGTACTGCATGATATCAGCTTTTCTGTAAATAAGGGAGAAACAGTGGCATTCATCGGCT
CCACGGGCAGCGGAAAAAGCACACTGATTAATCTCGTCCCTCGATTTATCGATGCAACTGAAGGCGAGGTTCTAGTAGGC
GGAGTCAATGTGAAGGAGTATGCCCAGGAGGCACTAAATAATAAAATCGGATATGTACCGCAGAAAGCAGTGATGTTTAA
AGGTACTGTCAGTACCAATGTAGCCTTTGGCGACAGTGGACGGGGCGAGATGTCGGAGTGGGAAGCCAGAGGCAATGACC
GGGGCGAGGCGTCCGAATCGGAAATAAGAAGGGCAGTACGAATTGCTCAAGGTTCCGATTTTGTTGAACAAATGGAAGGC
GGATATGAGGCAGAGATCGCTCAGGGCGGTTCCAACGTATCCGGAGGTCAGAAGCAGCGCCTGGCCATTGCAAGGGCAGT
TTGCCGCAATCCGGAAATCTTCATTTTTGACGATAGTTTTTCTGCGCTGGACTATAAGACCGATCGTATGCTGCGCTTGG
AATTGAAGCGGGAGACCGCAGGGGCGACAAGCATGATTGTGGCGCAGCGAATCGGAACCATTCTTGATGCTGATCAGATT
ATCGTATTGGAAGAAGGACGGATCGTAGGAAAGGGAACCCATCGGGAACTGCTGAGCTCCTGTGAAGTATACCGGGAAAT
TGCGATGTCACAGCTGAGTGAGGAGGAATTGGCAATATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-519)

ABC transporter transmembrane region (ABC_membrane)

(18-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.545

100

0.534

Multiple sequence alignment