Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   FR741_RS18860 Genome accession   NZ_CP042452
Coordinates   806613..807794 (-) Length   393 a.a.
NCBI ID   WP_167427433.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FA3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 801613..812794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS18845 (FR741_19545) - 802844..803392 (+) 549 WP_005398196.1 GNAT family N-acetyltransferase -
  FR741_RS18850 (FR741_19550) - 803479..804096 (-) 618 WP_074190595.1 HAD family phosphatase -
  FR741_RS18855 (FR741_19555) cqsS 804464..806509 (+) 2046 WP_006742321.1 response regulator Regulator
  FR741_RS18860 (FR741_19560) cqsA 806613..807794 (-) 1182 WP_167427433.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FR741_RS18865 (FR741_19565) ylqF 808135..809079 (-) 945 WP_005395264.1 ribosome biogenesis GTPase YlqF -
  FR741_RS18870 (FR741_19570) - 809758..810912 (+) 1155 WP_167427434.1 EAL domain-containing protein -
  FR741_RS18875 - 810917..811066 (+) 150 WP_048624969.1 hypothetical protein -
  FR741_RS18880 (FR741_19575) - 811073..812434 (+) 1362 WP_006742317.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43708.99 Da        Isoelectric Point: 6.1082

>NTDB_id=378015 FR741_RS18860 WP_167427433.1 806613..807794(-) (cqsA) [Vibrio diabolicus strain FA3]
MSETIQSKPLPSFIEERLDFHIQDLIEPNENKKHLVLGKRPPCNAVVMQSNDYLALSHNKEIQNVHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTN
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGTQGAGLLQELDLTHMVDFVTVSLAK
TFAYRAGAILGAEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIKKADDKREILFKRAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLSACQEAFVHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=378015 FR741_RS18860 WP_167427433.1 806613..807794(-) (cqsA) [Vibrio diabolicus strain FA3]
ATGAGTGAAACTATACAAAGCAAACCACTTCCTTCCTTTATTGAGGAACGCCTAGATTTTCATATTCAAGATCTAATTGA
ACCGAACGAGAACAAGAAACACCTTGTTCTTGGTAAACGTCCACCATGTAATGCCGTTGTTATGCAAAGCAATGATTACC
TGGCACTGTCTCATAACAAGGAGATTCAAAACGTGCATCGTGATGCGATTTCTCAACACGATGACAACGTCGTGATGTCC
GCGATTTTCTTGCAAGATGATGAGTCGAAACCTGCATTTGAAACTCAACTAGCCAGTTTTGTCGGCATGCCTAGCTGTCT
GCTTTCTCAATCGGGATGGGCTGCGAATGTCGGTTTATTACAGACTATTTGTGCACCGAACATACCTGTGTATATCGACT
TCTTTGCGCATATGTCTTTATGGGAAGGTGCACGTATCGCAGGAGCACAAATTCATCCGTTCATGCATAACAACACCAAC
CACTTACGAAAACAGATTTCACGCCATGGTTCGGGAATTATTGTTGTGGATTCGGTTTACAGCACTATCGGAACCATTGC
TCCTCTACGTGATATCTACGAAATAGCACAAGAGTTTGACTGCGGCTTAGTTGTGGATGAATCGCACTCGTTAGGTACGC
ACGGTACGCAAGGCGCTGGGCTACTGCAAGAGCTGGATTTGACTCATATGGTGGATTTTGTAACCGTAAGTCTTGCAAAG
ACATTTGCTTATCGTGCTGGCGCAATTTTAGGTGCAGAAAAGCTGGCGAAGACGCTTCCATTTGTCGCGTATCCTGCCAT
TTTCAGCTCCACCGTGTTACCGCAAGAAATTATTCGGTTAGAAAAAACACTGGACGTCATAAAAAAAGCCGATGACAAAC
GGGAGATTTTGTTTAAAAGAGCGAAGTCTCTAGCCGTTGGTTTAAAACGTATTGGGTTTACTATTCGCAGTGAGTCGCAA
ATTATCGCGCTAGAATGTGGCAACGAAAGAAACACTGAGCGAGTTCGCGACTTTTTAGAAGAAAGAGATGTCTTTGGCGC
AGTTTTCTGTCGCCCTGCAACAGGAAGAAACAAGAACATCATTCGTTTTTCTGTCAATGCGGACATGACTGCCGCCGAAG
TCGATCACGTTCTTTCCGCCTGCCAAGAAGCGTTTGTTCATCCCGATCTAGAGTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.364

98.473

0.565

Multiple sequence alignment