Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   FR729_RS10760 Genome accession   NZ_CP042449
Coordinates   2310650..2311264 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FA2     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2305650..2316264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR729_RS10740 (FR729_11075) - 2305934..2306851 (-) 918 WP_005380000.1 ABC transporter ATP-binding protein -
  FR729_RS10745 (FR729_11080) - 2307102..2308772 (-) 1671 WP_167415435.1 SulP family inorganic anion transporter -
  FR729_RS10750 (FR729_11085) can 2309054..2309722 (+) 669 WP_005379996.1 carbonate dehydratase -
  FR729_RS10755 (FR729_11090) hpt 2309800..2310330 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  FR729_RS10760 (FR729_11095) opaR 2310650..2311264 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  FR729_RS10765 (FR729_11100) lpdA 2311403..2312830 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  FR729_RS10770 (FR729_11105) aceF 2313098..2314990 (-) 1893 WP_005396678.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=377936 FR729_RS10760 WP_005379994.1 2310650..2311264(+) (opaR) [Vibrio alginolyticus strain FA2]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=377936 FR729_RS10760 WP_005379994.1 2310650..2311264(+) (opaR) [Vibrio alginolyticus strain FA2]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGCTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTTTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCGTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment