Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FSB73_RS14785 Genome accession   NZ_CP042434
Coordinates   3695965..3697389 (+) Length   474 a.a.
NCBI ID   WP_146783767.1    Uniprot ID   A0A5B8VNQ8
Organism   Arachidicoccus ginsenosidivorans strain Gsoil 809     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3690965..3702389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSB73_RS14765 (FSB73_14765) - 3691243..3691752 (-) 510 WP_146783761.1 phosphoribosyltransferase family protein -
  FSB73_RS25195 - 3691914..3692483 (+) 570 WP_225974047.1 hypothetical protein -
  FSB73_RS25200 - 3692516..3693241 (+) 726 WP_225974048.1 (Fe-S)-binding protein -
  FSB73_RS14775 (FSB73_14775) - 3693370..3694281 (+) 912 WP_146783764.1 MBL fold metallo-hydrolase -
  FSB73_RS14780 (FSB73_14780) - 3694337..3695398 (+) 1062 WP_225974049.1 N-acetylmuramoyl-L-alanine amidase -
  FSB73_RS14785 (FSB73_14785) radA 3695965..3697389 (+) 1425 WP_146783767.1 DNA repair protein RadA Machinery gene
  FSB73_RS14790 (FSB73_14790) - 3697455..3698918 (+) 1464 WP_146783770.1 MFS transporter -
  FSB73_RS14795 (FSB73_14795) - 3698990..3699967 (+) 978 WP_146783773.1 ROK family protein -
  FSB73_RS14800 (FSB73_14800) - 3700126..3702378 (+) 2253 WP_146783776.1 GH92 family glycosyl hydrolase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 52068.75 Da        Isoelectric Point: 6.6488

>NTDB_id=377879 FSB73_RS14785 WP_146783767.1 3695965..3697389(+) (radA) [Arachidicoccus ginsenosidivorans strain Gsoil 809]
MAKIKKAFFCNNCGYESPKWLGKCPSCSSWNTFVEEVIQTGAQPSQATWGDYHPAPDSANGEVGTGITPKNRQTRIVTLD
QIQTQKEVRIQTSDPEINRVLGGGIVPGSIVLVAGEPGIGKSTLFLQAGLALQKHRVLYISGEESEQQIKMRAARIDASN
DQFYLLTETVTQEIFKEIRKLRPQVLIVDSIQTLQSNIIESSPGSVSQIRECAAEFQRFAKETGTPVFLIGHITKDGSIA
GPKILEHMVDTVLQFEGDRHYAYRILRTLKNRFGSTAELGIYEMTSTGMRAVSNPSEILITQKTEELSGSAIAASMEGMR
PLLMEVQALVTQSVYGTPQRTVSGFDLRRLQLLLAVLEKRGGFLFGMKDVFINIAGGLKVEDSSIDLAVISALLSSYEDK
PLPPTICFAGEVGLNGEIRAVNRIEQRVAEAEKLGFDQIIVSKYNKKGFAAEAKGIKVTALGKVEELYDLLFRD

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=377879 FSB73_RS14785 WP_146783767.1 3695965..3697389(+) (radA) [Arachidicoccus ginsenosidivorans strain Gsoil 809]
ATGGCGAAAATTAAAAAAGCCTTTTTTTGTAATAATTGTGGCTATGAAAGCCCCAAATGGCTGGGTAAATGTCCCAGTTG
TAGTAGTTGGAATACGTTTGTGGAAGAAGTAATCCAGACAGGCGCCCAGCCGTCTCAAGCTACATGGGGAGATTACCACC
CGGCGCCAGATAGCGCAAATGGTGAGGTCGGTACGGGCATTACACCCAAAAATCGCCAAACGCGTATTGTCACATTAGAT
CAGATTCAGACCCAAAAAGAAGTTCGGATACAGACCAGCGATCCGGAAATTAACCGGGTGCTTGGTGGTGGGATCGTGCC
GGGGTCCATTGTACTGGTTGCCGGCGAACCAGGTATTGGTAAAAGTACCTTGTTTTTGCAGGCGGGTCTGGCCTTGCAAA
AACACCGCGTTTTATATATCAGCGGTGAAGAGAGCGAGCAGCAGATTAAAATGCGGGCTGCCCGTATTGATGCGAGCAAT
GATCAGTTTTACTTACTTACAGAAACAGTGACCCAGGAGATTTTTAAGGAAATCCGTAAATTAAGACCCCAGGTACTGAT
TGTAGATTCCATACAGACATTGCAATCCAATATTATAGAATCCTCACCGGGCTCCGTCTCGCAGATCAGAGAATGCGCCG
CTGAGTTTCAAAGGTTTGCTAAAGAGACCGGTACGCCGGTGTTTTTAATCGGGCATATCACCAAGGACGGCAGTATTGCA
GGGCCCAAGATTCTGGAGCACATGGTCGATACGGTGCTGCAGTTTGAAGGAGACAGGCATTATGCCTACCGGATACTTAG
AACCTTAAAGAACCGGTTTGGCTCAACGGCTGAGCTGGGCATCTATGAAATGACCTCCACAGGTATGCGGGCAGTCAGTA
ATCCATCAGAGATTTTAATTACCCAGAAGACAGAGGAGTTAAGTGGCAGTGCCATTGCCGCCAGCATGGAAGGCATGCGC
CCTTTGCTGATGGAGGTGCAGGCACTGGTTACCCAAAGCGTTTACGGCACCCCACAAAGAACGGTAAGCGGTTTTGATCT
GAGAAGATTACAACTCTTACTGGCTGTTTTGGAAAAAAGAGGTGGATTTTTATTCGGAATGAAAGATGTTTTTATCAATA
TTGCCGGTGGTCTAAAGGTTGAAGACTCTTCCATTGACCTGGCGGTGATCTCTGCCTTGCTGTCTTCCTACGAAGATAAG
CCCCTGCCGCCTACCATCTGTTTTGCCGGCGAGGTTGGCCTCAATGGGGAAATCCGGGCGGTCAACCGGATTGAGCAACG
GGTGGCCGAGGCCGAGAAACTTGGATTTGATCAGATTATTGTCTCTAAATATAATAAGAAGGGATTTGCGGCCGAGGCAA
AAGGCATTAAGGTGACGGCACTGGGTAAGGTAGAAGAGCTTTACGATCTGCTATTTAGAGATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(85-237)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(359-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8VNQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.414

99.789

0.483
  radA Streptococcus mitis NCTC 12261

48.203

99.789

0.481
  radA Streptococcus pneumoniae Rx1

48.203

99.789

0.481
  radA Streptococcus pneumoniae D39

48.203

99.789

0.481
  radA Streptococcus pneumoniae R6

48.203

99.789

0.481
  radA Streptococcus pneumoniae TIGR4

48.203

99.789

0.481
  radA Streptococcus mitis SK321

47.992

99.789

0.479

Multiple sequence alignment