Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HB751_RS05140 Genome accession   NZ_CP050272
Coordinates   1058864..1059463 (-) Length   199 a.a.
NCBI ID   WP_002264648.1    Uniprot ID   -
Organism   Streptococcus mutans strain P6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1053864..1064463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB751_RS05120 (HB751_05120) - 1054132..1055490 (-) 1359 WP_002283842.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  HB751_RS05125 (HB751_05125) - 1055568..1056518 (-) 951 WP_002264646.1 bile acid:sodium symporter family protein -
  HB751_RS05130 (HB751_05130) - 1056871..1057431 (+) 561 WP_019804690.1 folate family ECF transporter S component -
  HB751_RS05135 (HB751_05135) - 1057603..1058652 (-) 1050 WP_002272953.1 D-alanine--D-alanine ligase -
  HB751_RS05140 (HB751_05140) recR 1058864..1059463 (-) 600 WP_002264648.1 recombination mediator RecR Machinery gene
  HB751_RS05145 (HB751_05145) pbp2b 1059474..1061552 (-) 2079 WP_002267358.1 penicillin-binding protein PBP2B -
  HB751_RS05150 (HB751_05150) - 1061798..1062490 (-) 693 WP_002263252.1 phosphoglycerate mutase -
  HB751_RS05155 (HB751_05155) - 1062708..1063643 (+) 936 WP_019319936.1 dihydroorotate oxidase -
  HB751_RS05160 (HB751_05160) - 1063654..1063815 (-) 162 WP_019319935.1 hypothetical protein -
  HB751_RS05165 (HB751_05165) - 1063879..1064355 (-) 477 WP_002263255.1 Fur family transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21878.99 Da        Isoelectric Point: 4.6800

>NTDB_id=377865 HB751_RS05140 WP_002264648.1 1058864..1059463(-) (recR) [Streptococcus mutans strain P6]
MLYPTPIAKLIESFTKLPGIGIKTATRLAFYTIGMSDEDVNNFAKNLLAAKRELTYCFVCGNLTDDDPCNICTDESRDRS
TVLVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGIGPDDINLKSLLTRLRDNSDIHEVIIATNATADGEATAMYISRV
LKPAGITVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 600 bp        

>NTDB_id=377865 HB751_RS05140 WP_002264648.1 1058864..1059463(-) (recR) [Streptococcus mutans strain P6]
ATGCTCTACCCAACGCCTATTGCCAAACTTATTGAGAGTTTCACAAAATTACCGGGTATTGGTATCAAAACAGCGACTCG
CTTAGCTTTTTATACAATTGGTATGAGTGATGAAGACGTTAATAACTTTGCTAAAAATCTTCTAGCTGCTAAACGAGAAT
TGACCTACTGTTTTGTTTGTGGCAATCTGACAGATGATGATCCTTGCAATATTTGTACAGATGAAAGCAGAGACCGCTCA
ACTGTTTTAGTAGTTGAAGATAGTAAGGATGTTTCTGCAATGGAAAAAATTCAGGAATATCATGGTCTTTATCATGTTTT
ACACGGCCTGATTTCTCCTATGAATGGTATTGGTCCTGATGATATTAATTTGAAAAGTCTTCTGACACGCTTACGTGATA
ATAGTGATATTCATGAAGTCATTATCGCAACTAATGCCACAGCAGATGGAGAAGCAACGGCTATGTATATTTCCAGAGTT
CTCAAACCTGCTGGTATTACAGTTACACGTTTAGCGCGTGGGCTTGCTGTTGGTTCTGACATTGAGTATGCTGATGAAGT
AACTCTGCTTCGAGCAATTGAAAACAGGACAGAGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-172)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

83.417

100

0.834
  recR Bacillus subtilis subsp. subtilis str. 168

63.317

100

0.633
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.98

98.492

0.482