Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   HB751_RS04945 Genome accession   NZ_CP050272
Coordinates   1013466..1014404 (-) Length   312 a.a.
NCBI ID   WP_002268795.1    Uniprot ID   -
Organism   Streptococcus mutans strain P6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1008466..1019404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB751_RS04925 (HB751_04925) prsA 1008995..1009996 (-) 1002 WP_002261893.1 peptidylprolyl isomerase PrsA -
  HB751_RS04930 (HB751_04930) - 1010058..1010765 (-) 708 WP_002261894.1 O-methyltransferase -
  HB751_RS04935 (HB751_04935) - 1010815..1011432 (-) 618 WP_002261895.1 HAD-IA family hydrolase -
  HB751_RS04940 (HB751_04940) pepF 1011645..1013444 (-) 1800 WP_019804697.1 oligoendopeptidase F Regulator
  HB751_RS04945 (HB751_04945) coiA 1013466..1014404 (-) 939 WP_002268795.1 competence protein CoiA Machinery gene
  HB751_RS04950 (HB751_04950) - 1014709..1015602 (-) 894 WP_002267117.1 alpha/beta hydrolase -
  HB751_RS04955 (HB751_04955) - 1015708..1015988 (-) 281 Protein_979 hypothetical protein -
  HB751_RS04960 (HB751_04960) - 1016073..1016200 (+) 128 Protein_980 ArsR/SmtB family transcription factor -
  HB751_RS04965 (HB751_04965) - 1016233..1017201 (-) 969 WP_002285395.1 alcohol dehydrogenase catalytic domain-containing protein -
  HB751_RS04970 (HB751_04970) - 1017329..1018702 (+) 1374 WP_019804696.1 PLP-dependent aminotransferase family protein -
  HB751_RS04975 (HB751_04975) - 1018806..1019300 (-) 495 WP_002278217.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 312 a.a.        Molecular weight: 36694.02 Da        Isoelectric Point: 8.7637

>NTDB_id=377862 HB751_RS04945 WP_002268795.1 1013466..1014404(-) (coiA) [Streptococcus mutans strain P6]
MLVARDKNGKLINLLNGIPDKSDFYCPACQSPVRLKNGRVMRPHFAHVALQDCKFYSENESAEHLNLKAELYQSLSQTES
VEIEKVIPEPEQIADLLVNHNLALEVQCSRLSEARLCERTQAYQANGYQVLWLLGEKLWLDRRLSSLHKQFLYFSQNMGF
HLWELDINRRELRLKYLIYEDIFGKVYYQTRSCSFDGNIMTFLQLPYAKQTLTSYPVHQRRQVGLAIQKQLLARNPRWLR
QQELAYSQGRNLIAQSDADFFPQVRLPQCSRGFCQINQDVSHFSAAFFQYYQKQKDKEIQTLYPPAFYDKMK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=377862 HB751_RS04945 WP_002268795.1 1013466..1014404(-) (coiA) [Streptococcus mutans strain P6]
ATGTTAGTTGCAAGGGATAAAAATGGAAAGTTGATTAATCTTCTGAATGGTATTCCTGACAAAAGTGATTTTTATTGTCC
TGCCTGCCAATCGCCTGTACGTCTCAAAAACGGCAGGGTTATGCGTCCGCATTTTGCCCATGTTGCTTTGCAAGACTGCA
AATTTTACAGTGAAAATGAGTCCGCTGAACACCTAAACTTGAAAGCAGAACTCTATCAGTCATTATCTCAGACGGAAAGT
GTTGAGATCGAAAAGGTCATACCAGAACCTGAACAAATCGCAGACTTATTAGTTAATCATAACCTAGCATTAGAAGTTCA
GTGTTCTCGCTTGTCTGAAGCTCGTCTGTGTGAGCGAACGCAGGCCTATCAGGCCAATGGTTATCAGGTACTGTGGCTGC
TTGGGGAGAAACTCTGGTTGGATAGGCGTTTATCCAGCTTGCACAAACAATTTCTTTACTTTTCACAAAATATGGGCTTT
CATCTTTGGGAATTAGATATTAATAGGCGTGAGTTGCGACTTAAGTACTTGATTTATGAAGATATTTTTGGCAAAGTCTA
TTATCAAACGAGGTCTTGTTCTTTTGATGGTAATATCATGACCTTTTTACAATTGCCCTATGCTAAGCAAACCTTGACTT
CTTATCCTGTTCACCAGCGCAGGCAGGTTGGTTTAGCCATTCAAAAACAACTGCTAGCACGCAATCCGCGTTGGCTGCGT
CAGCAAGAACTTGCTTATTCACAGGGGCGTAATCTGATAGCACAATCAGATGCTGATTTTTTCCCGCAGGTAAGGTTACC
GCAATGTTCAAGAGGCTTTTGTCAAATCAATCAGGATGTATCTCATTTTAGCGCAGCTTTTTTTCAATATTATCAAAAGC
AAAAAGACAAAGAAATTCAAACACTGTATCCGCCAGCCTTTTATGATAAAATGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

47.249

99.038

0.468

  coiA Streptococcus pneumoniae Rx1

46.278

99.038

0.458

  coiA Streptococcus pneumoniae D39

46.278

99.038

0.458

  coiA Streptococcus pneumoniae R6

46.278

99.038

0.458

  coiA Streptococcus pneumoniae TIGR4

45.955

99.038

0.455

  coiA Lactococcus lactis subsp. cremoris KW2

39.385

100

0.41


Multiple sequence alignment