Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FRZ59_RS05035 Genome accession   NZ_CP042432
Coordinates   1208691..1210127 (-) Length   478 a.a.
NCBI ID   WP_132128219.1    Uniprot ID   A0A4R3KYQ9
Organism   Anseongella ginsenosidimutans strain Gsoil 524     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1203691..1215127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRZ59_RS05020 (FRZ59_05020) carB 1204759..1207623 (+) 2865 WP_132128216.1 carbamoyl-phosphate synthase large subunit -
  FRZ59_RS05025 (FRZ59_05025) - 1207626..1208003 (+) 378 WP_132128217.1 co-chaperone GroES family protein -
  FRZ59_RS05030 (FRZ59_05030) - 1208147..1208626 (-) 480 WP_132128218.1 DUF456 domain-containing protein -
  FRZ59_RS05035 (FRZ59_05035) radA 1208691..1210127 (-) 1437 WP_132128219.1 DNA repair protein RadA Machinery gene
  FRZ59_RS05040 (FRZ59_05040) - 1210111..1210335 (-) 225 WP_132128220.1 YebO family protein -
  FRZ59_RS05045 (FRZ59_05045) - 1210364..1211911 (-) 1548 WP_132128221.1 Rne/Rng family ribonuclease -
  FRZ59_RS19725 - 1211972..1212061 (-) 90 WP_008506795.1 hypothetical protein -
  FRZ59_RS05050 (FRZ59_05050) - 1212091..1212915 (-) 825 WP_132128222.1 tetratricopeptide repeat protein -
  FRZ59_RS05055 (FRZ59_05055) - 1212919..1213233 (-) 315 WP_132128223.1 HU family DNA-binding protein -
  FRZ59_RS05060 (FRZ59_05060) mutY 1213452..1214498 (+) 1047 WP_132128224.1 A/G-specific adenine glycosylase -
  FRZ59_RS05065 (FRZ59_05065) - 1214525..1215001 (+) 477 WP_132128225.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 52307.01 Da        Isoelectric Point: 6.4193

>NTDB_id=377862 FRZ59_RS05035 WP_132128219.1 1208691..1210127(-) (radA) [Anseongella ginsenosidimutans strain Gsoil 524]
MNRAVKTRTAYFCQSCGYESAKWLGKCPSCESWNSFAEEVIVKGNGKQAGAKTGVNRVNQPVKISEIEFSPQYRISTADA
ELDRVLGGGIVPGSLVLLGGEPGIGKSTLLLQVAMQLPLKILYVSGEESQQQIRLRANRLQPDLNQNEDTSAKPDEAPPQ
SGMGASGLYILTETSTQHILKQAEQLEPQLVIIDSVQTLYSAHIESTPGSVSQVRECTAELLRFAKESHIPVFMIGHITK
DGLIAGPKILEHMVDTVLQFEGDRHHTYRILRAIKNRFGAAAELGVYEMQGNGMRGVNNPSEVLLSQREEALSGVAVSVT
LEGIRPMLIETQALVSPSVYGTPQRSATGFDSRRMNMLLAVLEKRCGFRLGMKDVFLNITGGIRIDDPAIDLGLVCSIIS
SHEDIPLPPHCCFAGEVGLSGEIRAVNRVEQRIAEAEKLGFETLYISRYNRKELNLSRYKIEVIAVGKIEEVIGSLFG

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=377862 FRZ59_RS05035 WP_132128219.1 1208691..1210127(-) (radA) [Anseongella ginsenosidimutans strain Gsoil 524]
ATGAACAGAGCGGTTAAGACCAGGACGGCTTATTTCTGCCAAAGCTGCGGCTATGAATCGGCGAAGTGGCTGGGAAAATG
CCCTTCCTGCGAGTCATGGAATAGTTTTGCCGAAGAAGTGATCGTCAAGGGAAACGGTAAACAGGCAGGCGCGAAAACAG
GCGTTAACCGCGTTAATCAGCCGGTGAAGATCAGCGAGATTGAATTTTCGCCACAATATAGGATCAGTACTGCCGACGCC
GAACTGGACCGGGTCTTGGGCGGAGGCATTGTTCCGGGTTCGCTCGTATTACTTGGCGGAGAACCGGGAATAGGCAAATC
CACGCTCTTGCTCCAGGTAGCTATGCAGCTGCCGCTGAAGATCCTGTATGTCTCCGGAGAAGAAAGCCAGCAGCAAATAC
GCCTCAGAGCCAACAGGCTCCAACCGGACCTGAATCAAAATGAGGATACCAGCGCAAAGCCTGATGAAGCGCCCCCGCAA
TCCGGTATGGGAGCTTCCGGGCTCTATATTCTCACCGAAACATCCACTCAGCATATCCTGAAGCAAGCCGAACAGCTGGA
ACCGCAGCTGGTTATTATTGATTCGGTTCAAACTCTTTATTCGGCCCATATAGAATCTACTCCAGGCAGCGTATCCCAGG
TCCGGGAATGTACGGCAGAACTCCTGCGCTTTGCAAAGGAAAGCCATATTCCGGTATTCATGATCGGCCATATCACTAAG
GACGGGCTTATTGCCGGCCCCAAAATACTGGAACATATGGTAGATACCGTTCTGCAGTTCGAGGGTGACCGGCATCATAC
GTACCGGATCCTCCGTGCAATTAAGAACCGCTTCGGCGCTGCCGCTGAACTCGGAGTATATGAAATGCAGGGAAATGGCA
TGCGGGGAGTTAACAACCCCTCCGAAGTACTGCTCTCCCAGCGGGAAGAAGCCCTGAGCGGAGTAGCCGTATCGGTTACA
CTGGAAGGCATTCGCCCGATGTTGATTGAAACACAAGCCCTGGTAAGCCCCTCCGTATACGGAACTCCGCAGCGTTCCGC
CACAGGCTTTGATAGCCGGCGGATGAATATGCTGCTGGCAGTCCTTGAAAAACGCTGTGGATTCCGCCTTGGCATGAAAG
ATGTCTTCCTTAATATTACCGGCGGCATACGAATAGACGATCCTGCTATTGACCTGGGCCTGGTTTGCTCGATCATTTCC
TCCCATGAGGACATTCCCCTGCCTCCTCATTGCTGTTTTGCCGGAGAGGTGGGGCTTTCAGGGGAAATAAGGGCAGTTAA
CCGGGTGGAACAACGCATCGCAGAAGCGGAAAAGCTGGGTTTTGAAACGCTCTATATATCCCGGTACAACCGGAAGGAGT
TAAATCTTTCCCGGTATAAAATAGAAGTTATTGCTGTTGGGAAAATTGAGGAAGTTATCGGAAGTTTGTTTGGGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-449)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-38)

AAA domain (AAA_25)

(75-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R3KYQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.847

99.791

0.487
  radA Streptococcus pneumoniae Rx1

48.421

99.372

0.481
  radA Streptococcus pneumoniae D39

48.421

99.372

0.481
  radA Streptococcus pneumoniae R6

48.421

99.372

0.481
  radA Streptococcus pneumoniae TIGR4

48.421

99.372

0.481
  radA Streptococcus mitis NCTC 12261

48.211

99.372

0.479
  radA Streptococcus mitis SK321

48.211

99.372

0.479

Multiple sequence alignment