Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL80_RS03500 Genome accession   NZ_CP042420
Coordinates   689459..690004 (+) Length   181 a.a.
NCBI ID   WP_055308449.1    Uniprot ID   -
Organism   Leuconostoc lactis strain CBA3622     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 684459..695004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL80_RS03470 (FGL80_03470) - 684502..685365 (+) 864 WP_055308453.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  FGL80_RS03475 (FGL80_03475) - 685387..685953 (+) 567 WP_055308452.1 ECF-type riboflavin transporter substrate-binding protein -
  FGL80_RS03480 (FGL80_03480) - 686000..687745 (+) 1746 WP_055308451.1 ABC transporter ATP-binding protein -
  FGL80_RS03485 (FGL80_03485) - 687738..688571 (+) 834 WP_055308450.1 energy-coupling factor transporter transmembrane component T -
  FGL80_RS03490 (FGL80_03490) - 688657..688962 (+) 306 WP_010000976.1 hypothetical protein -
  FGL80_RS03495 (FGL80_03495) rpsF 689129..689425 (+) 297 WP_010000977.1 30S ribosomal protein S6 -
  FGL80_RS03500 (FGL80_03500) ssb 689459..690004 (+) 546 WP_055308449.1 single-stranded DNA-binding protein Machinery gene
  FGL80_RS03505 (FGL80_03505) rpsR 690041..690325 (+) 285 WP_004904499.1 30S ribosomal protein S18 -
  FGL80_RS03510 (FGL80_03510) - 690479..692506 (+) 2028 WP_055308548.1 DHH family phosphoesterase -
  FGL80_RS03515 (FGL80_03515) rplI 692564..693016 (+) 453 WP_055308448.1 50S ribosomal protein L9 -
  FGL80_RS03520 (FGL80_03520) dnaB 693019..694485 (+) 1467 WP_055308447.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19501.33 Da        Isoelectric Point: 4.6689

>NTDB_id=377816 FGL80_RS03500 WP_055308449.1 689459..690004(+) (ssb) [Leuconostoc lactis strain CBA3622]
MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQAGEREADFINAVIWRKAAENFANFTGKGALVAVEGRLQTR
NYENNQGQRVYVTEVVVDNFSLLESRAESDKRRAQNGSSEPSHQGGASFGAPSDNAFGGVDPFATASQANPQAATPTNDA
PNPFAASGKTEIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=377816 FGL80_RS03500 WP_055308449.1 689459..690004(+) (ssb) [Leuconostoc lactis strain CBA3622]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGTGATGTGGAATTACGTTATACCCAATCGGGTACAGCAGTCGG
CACGTTTAGTTTGGCGGTTAACCGTCAATTCACCAACCAAGCTGGTGAACGTGAAGCTGACTTTATTAACGCCGTTATTT
GGCGTAAAGCAGCTGAAAATTTTGCAAACTTTACTGGAAAAGGTGCACTAGTTGCCGTTGAAGGGCGTTTGCAAACACGG
AATTATGAAAACAACCAAGGACAACGTGTTTACGTGACCGAAGTTGTCGTTGATAATTTCTCATTACTTGAATCACGTGC
TGAAAGTGATAAGCGACGCGCCCAAAACGGGTCGTCAGAACCATCTCACCAAGGTGGTGCGTCATTCGGTGCGCCAAGTG
ATAATGCATTTGGTGGCGTTGATCCGTTTGCTACGGCTAGCCAAGCTAACCCACAAGCGGCAACACCAACAAATGATGCC
CCTAACCCATTTGCGGCGAGTGGCAAAACAGAAATTGATATATCAGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.536

100

0.635
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.249

100

0.552

Multiple sequence alignment