Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HB752_RS09435 Genome accession   NZ_CP050271
Coordinates   1922468..1923559 (-) Length   363 a.a.
NCBI ID   WP_002275016.1    Uniprot ID   -
Organism   Streptococcus mutans strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1917468..1928559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB752_RS09420 (HB752_09420) - 1917593..1919212 (-) 1620 WP_002282070.1 ATP-binding cassette domain-containing protein -
  HB752_RS09425 (HB752_09425) trpS 1919645..1920667 (+) 1023 WP_002264241.1 tryptophan--tRNA ligase -
  HB752_RS09430 (HB752_09430) guaB 1920824..1922305 (+) 1482 WP_019804949.1 IMP dehydrogenase -
  HB752_RS09435 (HB752_09435) recF 1922468..1923559 (-) 1092 WP_002275016.1 DNA replication/repair protein RecF Machinery gene
  HB752_RS09440 (HB752_09440) yaaA 1923562..1923927 (-) 366 WP_002262455.1 S4 domain-containing protein YaaA -
  HB752_RS09445 (HB752_09445) - 1924006..1925253 (+) 1248 WP_019804948.1 pitrilysin family protein -
  HB752_RS09450 (HB752_09450) - 1925255..1926547 (+) 1293 WP_002283542.1 pitrilysin family protein -
  HB752_RS09455 (HB752_09455) - 1926620..1927597 (+) 978 WP_019314979.1 helix-turn-helix domain-containing protein -
  HB752_RS09460 (HB752_09460) pgsA 1927609..1928151 (+) 543 WP_002262451.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 42015.26 Da        Isoelectric Point: 9.8334

>NTDB_id=377809 HB752_RS09435 WP_002275016.1 1922468..1923559(-) (recF) [Streptococcus mutans strain S1]
MWIEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIQFGQKELNVSGLLNRVNGK
IPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVLFAPEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQR
NAYLKSEKKVDTDFLFVLDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQEHLKISYLSSVKFDHKKNIRDNFLN
LLQKNRQGDIFKKNTSVGPHRDDLAFFINQMNASFGSQGQHRSLILSLKLAEIELIKTVTGDYPILLLDDVMSELDNYRQ
IKLLEGIKDNVQTFITTTSLEHLQQLPKKLKLFTINQGKVLSE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=377809 HB752_RS09435 WP_002275016.1 1922468..1923559(-) (recF) [Streptococcus mutans strain S1]
ATGTGGATAGAAAAAATTAATTTAAAACATTATCGCAATTATACAGCCATTGAATCTGAATTTTCCCAAAGTCTTAATGT
TTTTGTGGGACAAAATGCTCAAGGAAAAACCAATTTCCTAGAGGCTATTTATTTTTTATCTTTAACCCGCAGTCATCGAA
CACGATCTGACAAAGAACTTATTCAATTTGGTCAAAAAGAATTAAATGTTTCTGGCCTTCTTAATCGTGTCAATGGCAAA
ATTCCTCTGGAAATCAACTTATCTAATAAAGGCCGAACAACAAAAATAAATTATCTCAAACAACCTAAACTTTCAGACTA
TATTGGAACAATGACTGTTGTTCTCTTTGCTCCAGAAGATCTTCAACTAATAAAAGGCTCCCCAAGTCTCAGAAGAAAGT
TTATTGACATTGATTTAGGACAAATCAAGCCTATTTACTTATCTGATTTATCAAATTATAATCATGTTCTTAAACAACGA
AATGCCTATTTAAAATCAGAGAAGAAGGTTGATACTGATTTTCTTTTCGTTCTAGATGAACAATTGGTAGATTATGGTAG
TAAGGTTATTGAGCATCGCCTTGATTTTATTCAAAATTTAACTAAAGAAGCTGATAAATATCATTTCTCTATTTCAAATC
AACAGGAACATTTAAAAATTTCCTACCTTTCTTCTGTTAAATTTGATCATAAAAAAAATATTCGTGATAACTTTTTAAAC
CTGCTACAAAAAAATCGGCAGGGTGATATTTTCAAAAAGAACACCAGTGTTGGTCCGCACCGAGATGATTTAGCCTTTTT
CATCAATCAAATGAACGCTAGCTTTGGTAGTCAAGGACAACATCGTAGCCTTATTTTATCTTTAAAGCTGGCTGAGATTG
AACTTATAAAAACAGTCACTGGGGATTATCCTATTCTCTTGTTAGATGATGTCATGAGTGAACTTGATAATTATAGACAA
ATCAAACTTTTAGAAGGCATCAAAGATAATGTTCAGACCTTTATAACAACAACTAGTCTTGAACATCTTCAACAACTCCC
TAAGAAACTAAAGTTATTTACTATCAACCAAGGAAAAGTGCTATCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65

99.174

0.645
  recF Bacillus subtilis subsp. subtilis str. 168

43.902

100

0.446