Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL72_RS07650 Genome accession   NZ_CP042410
Coordinates   1541303..1541848 (-) Length   181 a.a.
NCBI ID   WP_004899568.1    Uniprot ID   A0A7L8UXT3
Organism   Leuconostoc citreum strain CBA3621     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1536303..1546848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL72_RS07630 (FGL72_07630) dnaB 1536835..1538301 (-) 1467 WP_004899562.1 replicative DNA helicase -
  FGL72_RS07635 (FGL72_07635) rplI 1538303..1538755 (-) 453 WP_004899563.1 50S ribosomal protein L9 -
  FGL72_RS07640 (FGL72_07640) - 1538805..1540835 (-) 2031 WP_085699346.1 DHH family phosphoesterase -
  FGL72_RS07645 (FGL72_07645) rpsR 1540984..1541268 (-) 285 WP_004904499.1 30S ribosomal protein S18 -
  FGL72_RS07650 (FGL72_07650) ssb 1541303..1541848 (-) 546 WP_004899568.1 single-stranded DNA-binding protein Machinery gene
  FGL72_RS07655 (FGL72_07655) rpsF 1541881..1542177 (-) 297 WP_004899569.1 30S ribosomal protein S6 -
  FGL72_RS07660 (FGL72_07660) - 1542343..1542648 (-) 306 WP_004899571.1 hypothetical protein -
  FGL72_RS07665 (FGL72_07665) pepV 1542714..1544165 (-) 1452 WP_004899573.1 dipeptidase PepV -
  FGL72_RS07670 (FGL72_07670) - 1544186..1545010 (-) 825 WP_085699348.1 energy-coupling factor transporter transmembrane component T family protein -
  FGL72_RS07675 (FGL72_07675) - 1545007..1546704 (-) 1698 WP_146992887.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19786.54 Da        Isoelectric Point: 4.8246

>NTDB_id=377755 FGL72_RS07650 WP_004899568.1 1541303..1541848(-) (ssb) [Leuconostoc citreum strain CBA3621]
MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQSGEREADFINAVIWRKAAENFANFTGKGALVAVEGRLQTR
NYENNQGQRVYVTEVVVDNFSLLESRAESDKRRAQNGTSATTPSNDNHFGGSESNNNFNAVDPFAGANQNTQKSTATSEA
PNPFAASGKTEIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=377755 FGL72_RS07650 WP_004899568.1 1541303..1541848(-) (ssb) [Leuconostoc citreum strain CBA3621]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGGGATGTGGAATTACGCTATACGCAATCGGGTACAGCGGTCGG
CACGTTTAGCTTGGCGGTAAATCGCCAGTTCACTAATCAATCTGGTGAACGTGAAGCTGACTTTATTAACGCCGTTATCT
GGCGAAAAGCAGCGGAAAATTTTGCAAATTTCACTGGTAAGGGCGCTTTAGTCGCTGTCGAGGGTCGTTTGCAGACAAGA
AATTATGAAAATAATCAAGGCCAGCGTGTATACGTTACCGAGGTTGTTGTCGATAATTTCTCATTACTTGAATCACGTGC
TGAAAGCGATAAGCGTCGTGCCCAAAATGGTACGTCAGCAACAACACCTTCAAATGATAATCATTTTGGTGGTAGTGAAA
GTAATAATAACTTTAATGCTGTTGATCCTTTTGCTGGTGCAAATCAAAACACCCAAAAATCAACTGCAACAAGTGAAGCA
CCTAACCCATTTGCGGCTAGTGGCAAAACAGAAATTGATATATCAGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8UXT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.536

100

0.635
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.128

100

0.541

Multiple sequence alignment