Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL78_RS05445 Genome accession   NZ_CP042390
Coordinates   1024637..1026427 (+) Length   596 a.a.
NCBI ID   WP_146976308.1    Uniprot ID   -
Organism   Leuconostoc lactis strain CBA3626     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019637..1031427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL78_RS05425 (FGL78_05425) - 1019738..1021186 (+) 1449 WP_029509915.1 ABC transporter substrate-binding protein/permease -
  FGL78_RS05430 (FGL78_05430) - 1021183..1021935 (+) 753 WP_146976306.1 amino acid ABC transporter ATP-binding protein -
  FGL78_RS05435 (FGL78_05435) - 1022039..1023478 (+) 1440 WP_146977324.1 ABC transporter substrate-binding protein/permease -
  FGL78_RS05440 (FGL78_05440) - 1023528..1024367 (+) 840 WP_243129787.1 competence protein CoiA family protein -
  FGL78_RS09690 - 1024371..1024556 (+) 186 WP_243129788.1 hypothetical protein -
  FGL78_RS05445 (FGL78_05445) pepF 1024637..1026427 (+) 1791 WP_146976308.1 oligoendopeptidase F Regulator
  FGL78_RS05450 (FGL78_05450) - 1026500..1026898 (+) 399 WP_048700473.1 cytidine deaminase -
  FGL78_RS05455 (FGL78_05455) - 1026946..1027869 (+) 924 WP_146976313.1 phosphoglycerate dehydrogenase -
  FGL78_RS05460 (FGL78_05460) - 1027904..1028878 (-) 975 WP_048700469.1 LacI family DNA-binding transcriptional regulator -
  FGL78_RS05465 (FGL78_05465) - 1029060..1030076 (+) 1017 WP_146976316.1 zinc-dependent alcohol dehydrogenase family protein -
  FGL78_RS05470 (FGL78_05470) - 1030143..1030526 (+) 384 WP_029509908.1 VOC family protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 67375.95 Da        Isoelectric Point: 4.3611

>NTDB_id=377629 FGL78_RS05445 WP_146976308.1 1024637..1026427(+) (pepF) [Leuconostoc lactis strain CBA3626]
MAQLQRDEVPEELTWDLTSIFATDDDWETAYDALHQGAQALKQFVGHVGDSAQTLQAALEADLDLERQLEKVYVYAHQIY
DQDTTNQKYAAFNSRAQALWSEVSEATAYFQPEVLNIPEETLANYLKTAGLQPYQHLFDQILAQKPYTLPAEQEALLAGA
GDIFNASENTFGALDNSDMTFGDVHTETGEVVPLTNGLYSLLLESKSRELRQEAFEILYDSYIALQNTFASTLSSHVKGH
NYLAKVRHYRSAREAAILPHSLPTSVFETLRETVDANLPLLHRFVSLRKQVLGVDDVHSYDLYVPLVDEIDFDVTYDKAK
DIVLAALAPLGPDYIAVVKKAFDERWIDVVENKGKRTGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRQ
AQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHEQSAAGVALTAD
AMSTYYAALNQKYYGPDLFPDEEIAYEWARIPHFYYNYYVYQYATGEAAATTLADRILNQNGAEAYKDYLKAGASDYPLA
VIGQAGVDMTQADYLKEAFGVFEKRLDQLTDLLVHK

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=377629 FGL78_RS05445 WP_146976308.1 1024637..1026427(+) (pepF) [Leuconostoc lactis strain CBA3626]
ATGGCACAACTACAACGCGATGAAGTACCTGAAGAGTTAACTTGGGATTTGACCTCCATTTTTGCAACTGATGATGATTG
GGAAACAGCCTATGATGCGCTGCATCAAGGCGCGCAGGCGCTGAAGCAATTTGTGGGGCATGTTGGTGATTCAGCCCAAA
CGTTGCAAGCAGCACTGGAAGCCGATCTTGATTTGGAACGTCAATTAGAAAAAGTCTATGTCTATGCGCACCAAATTTAT
GATCAAGATACGACGAATCAAAAATATGCCGCTTTTAATAGCCGTGCGCAAGCACTTTGGTCTGAAGTCAGTGAAGCAAC
AGCTTACTTCCAACCAGAAGTGTTGAATATTCCAGAAGAAACGTTGGCGAACTATTTGAAGACGGCAGGGTTGCAACCTT
ACCAACATTTATTTGATCAAATTCTGGCGCAAAAGCCTTACACTTTGCCAGCAGAACAGGAAGCACTGCTGGCTGGAGCT
GGGGATATTTTTAACGCTTCCGAGAACACTTTTGGTGCGTTAGATAACTCAGACATGACGTTTGGGGATGTCCATACTGA
AACGGGTGAAGTGGTACCATTGACAAATGGCCTTTACAGTCTGTTGTTGGAATCTAAGTCACGTGAATTACGTCAAGAAG
CGTTTGAAATCTTGTACGATAGTTACATTGCCTTGCAAAACACTTTCGCGTCAACGTTATCGTCACATGTCAAAGGCCAT
AATTATTTAGCGAAAGTGCGTCACTATCGCTCAGCGCGGGAAGCAGCCATTTTACCACACAGCCTACCAACATCAGTATT
TGAAACGTTGCGTGAAACGGTTGATGCCAATTTGCCATTGTTGCATCGCTTTGTATCACTCCGTAAGCAAGTTTTGGGTG
TTGACGATGTGCACTCATACGACCTCTACGTACCGTTGGTCGATGAGATTGATTTTGATGTCACTTATGACAAAGCCAAA
GACATTGTGTTGGCCGCTTTGGCACCATTAGGACCAGACTATATTGCCGTGGTTAAAAAGGCCTTTGACGAACGCTGGAT
TGATGTGGTGGAAAATAAGGGCAAGCGGACTGGTGCGTATTCAAGTGGCACCTATGACACGAACCCCTTTATTTTGTTAA
ATTGGCAAAATAACTTAAATAACGTCTACACTTTGGCCCATGAAATGGGACACTCGGTGCATTCTTATTTGACTCGCCAA
GCACAACCTTATCATTATGGTGATTACCCAATTTTCCTAGCTGAAATTGCGTCAACAACCAATGAAAGCCTACTGACGGA
TTATTTGTTAAAGACAAATGATGATCCAAAATTCCAAGCTTATGTGTTGAATCAATATCTTGATGGCTTTAAGGGCACGG
TATTCCGACAGACCCAATTTGCGGAATTTGAAGATTGGATTCATGAACAAAGTGCCGCTGGAGTGGCGTTAACAGCTGAC
GCGATGAGTACGTACTATGCGGCATTGAACCAGAAGTACTATGGGCCAGATCTCTTCCCGGATGAAGAAATCGCGTATGA
ATGGGCCCGTATTCCACATTTCTACTACAATTATTATGTCTATCAGTATGCCACTGGTGAAGCCGCAGCGACGACTTTAG
CTGATCGTATTTTGAACCAGAATGGGGCAGAAGCGTATAAAGACTACTTAAAGGCCGGTGCCTCAGACTATCCATTAGCC
GTTATCGGCCAAGCAGGGGTTGATATGACGCAAGCGGATTATTTGAAGGAAGCCTTTGGCGTGTTTGAAAAGCGTCTCGA
TCAGTTGACAGATTTGTTAGTTCACAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.638

99.161

0.532

Multiple sequence alignment