Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   HB753_RS02600 Genome accession   NZ_CP050270
Coordinates   503319..506561 (+) Length   1080 a.a.
NCBI ID   WP_167311813.1    Uniprot ID   -
Organism   Streptococcus mutans strain S4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 498319..511561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB753_RS02575 (HB753_02575) - 499254..499577 (+) 324 WP_002265227.1 PqqD family protein -
  HB753_RS02580 (HB753_02580) - 499574..500854 (+) 1281 WP_002265226.1 MATE family efflux transporter -
  HB753_RS02585 (HB753_02585) - 501163..501339 (+) 177 Protein_496 phenylalanine--tRNA ligase subunit beta -
  HB753_RS02590 (HB753_02590) - 501703..502029 (+) 327 WP_002266136.1 hypothetical protein -
  HB753_RS02595 (HB753_02595) - 502204..502449 (+) 246 WP_002262921.1 SemiSWEET family transporter -
  HB753_RS02600 (HB753_02600) rexB 503319..506561 (+) 3243 WP_167311813.1 ATP-dependent nuclease subunit B Machinery gene
  HB753_RS02605 (HB753_02605) rexA 506551..510189 (+) 3639 WP_019804846.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  HB753_RS02610 (HB753_02610) lacR 510414..511169 (+) 756 WP_002265225.1 transcriptional regulator LacR -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 124066.14 Da        Isoelectric Point: 5.8599

>NTDB_id=377626 HB753_RS02600 WP_167311813.1 503319..506561(+) (rexB) [Streptococcus mutans strain S4]
MKLLYTDIPYNITEILAEEAQIAAKAGKRVFYIAPNSLSFEKERAVLETLPERASFAITITRFEQMARYFVLNDIHQGET
IDDNGLAMVFYRTLSSFSDQDLRVFGRLKQDAHFINQLVDLYKELKASNLTVLELDQLNSAEKQEDLIKIFTEVETILSA
GHFDNQNKIAFFAQQIKFGHLDTALQDLTIVVDGFTRFSAEEENLIGLLHEKGVDIIIGTYISQKAYRSTFSNGNVYQAS
LDFIRGLAGKFQTKPEYVVSKQEALPAFTKLSQLFESCHDFSDSQLVLTDKDKEHVTIWDVINQKEEVEHVAKSIRRKLY
EGHRYKDILVLLGDVDAYKLQIGKIFDKYEIPYYFGKAESMSSHPLVHFVDSLERVKRYNFRAEDVMNLLKSGLYGKIRQ
NQLDKLEQYVIYADIKGKTKFFKDFTLDNHGQFDLKALNKLRAEVMSPLQELVKMQAQKGDSILQKLTNFLEAISLTNNF
SKLIQGVNDIEQEKNEQVWKTFTVILEQFHTIFGQEKMKLADFLALLRSGMLAADYRTVPASVDVVTVKSYDLVEPHSNK
FVFAMGMTQSHFPKIVQNKSLISDEERAKINEATPDNRRFDIVTKENLKKNHFTALSLFNAATQELVLTLPQILNEAEDN
TSSYLLELQDMGVPVVEKGRNRLAADPEDIGNYKALLSRVIELNRSAIDQELSKEEQTFWSVAVRYLRQKLAKEGLTIPE
VNDKMQTKQVAAEVMAARFPIDQPLNLSSSALTTFYNNQYLYFLQYVLGLQELETIHPDARNHGTYLHRVFELVMQDQST
DDFDSKLNRAIDITNHEDSFHLVYNEDEESRYALGILEDIARSTATILKGDNPVQVESEEEAFELMLDQTVKIRGVIDRI
DRLSDGSLGIVDYKSSKNTFDLQKFYNGLSPQLVTYIEALRSCKNLNETDKIFGAMYLHMQEPKTDLANMKSIEKIPETV
HKNLSYKGLFLEDEKAHLANGKYHLHDAVYSQKEVDLLLDYNKRLYRSAAKQIRKGNFLINPYSQDGKSVQGEQLKAITH
FEADRHMPYARKLYQLPRKEKRQGFLALMQSKKEEEGNDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=377626 HB753_RS02600 WP_167311813.1 503319..506561(+) (rexB) [Streptococcus mutans strain S4]
ATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGG
CAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACTCTGCCTGAGCGGG
CTTCCTTTGCTATTACCATTACGCGTTTTGAGCAAATGGCACGTTATTTTGTTTTAAATGATATTCATCAGGGCGAAACC
ATTGATGATAATGGACTTGCCATGGTTTTTTATCGTACTTTATCCAGTTTTTCAGACCAAGATTTGCGTGTTTTTGGGCG
TCTTAAGCAAGATGCTCATTTTATCAATCAATTGGTGGATTTGTATAAAGAACTCAAGGCTTCTAATCTGACTGTCTTGG
AATTAGATCAACTGAATTCGGCTGAAAAGCAGGAAGATTTGATTAAGATTTTTACAGAGGTTGAAACCATTTTAAGTGCT
GGCCATTTTGATAATCAAAACAAGATTGCCTTCTTTGCACAACAGATCAAATTCGGTCATTTAGATACGGCTTTGCAGGA
TTTGACAATTGTTGTTGATGGTTTCACACGTTTTTCTGCTGAAGAAGAAAATCTGATAGGACTGTTACATGAAAAAGGTG
TTGACATTATCATTGGGACTTATATTAGTCAAAAAGCTTATCGTTCAACTTTTTCGAATGGGAATGTCTATCAGGCTAGC
CTTGATTTCATTCGTGGTTTGGCTGGTAAATTTCAAACCAAACCAGAATATGTGGTATCAAAGCAAGAAGCTTTGCCTGC
CTTTACCAAACTTTCTCAGCTATTTGAAAGTTGTCATGATTTTTCGGACAGTCAGCTGGTCTTGACAGATAAGGACAAGG
AACATGTAACTATCTGGGATGTCATTAATCAAAAAGAAGAAGTGGAACATGTTGCTAAGAGCATTCGCCGGAAACTCTAT
GAAGGTCATCGTTACAAGGATATTTTGGTCCTTCTTGGGGATGTGGATGCCTATAAACTGCAGATTGGCAAGATTTTTGA
TAAGTATGAAATTCCCTATTATTTTGGCAAAGCGGAGTCCATGAGTTCGCACCCGCTGGTTCATTTTGTGGATTCTTTGG
AGCGGGTTAAACGTTATAATTTTCGTGCTGAGGATGTCATGAATCTGCTCAAATCAGGCCTATATGGCAAAATCAGGCAA
AATCAGTTAGATAAATTGGAGCAGTATGTCATTTATGCTGATATTAAAGGAAAAACAAAGTTTTTTAAGGACTTTACGCT
AGATAATCATGGGCAATTTGATCTAAAAGCCTTAAATAAACTGCGGGCAGAAGTCATGTCACCTTTACAAGAGCTGGTTA
AAATGCAGGCCCAAAAGGGAGACAGTATCCTGCAAAAATTGACCAACTTTTTAGAAGCCATTTCTTTAACGAATAATTTT
TCAAAATTAATCCAAGGTGTCAATGATATTGAGCAGGAAAAGAACGAGCAAGTTTGGAAAACTTTTACAGTTATTTTAGA
GCAATTTCATACGATTTTTGGACAAGAAAAAATGAAGTTGGCTGATTTTCTGGCACTCTTACGCAGCGGCATGCTGGCGG
CTGATTATCGGACGGTTCCTGCTAGTGTTGATGTTGTGACAGTTAAGTCTTATGATTTGGTGGAGCCCCATAGCAATAAA
TTTGTTTTTGCTATGGGAATGACCCAGTCTCATTTTCCTAAAATTGTCCAAAATAAGAGTCTTATTTCGGATGAAGAACG
TGCAAAAATCAATGAAGCAACTCCTGACAATCGTCGTTTTGATATTGTCACTAAGGAAAATCTCAAGAAAAATCATTTCA
CCGCCCTGTCACTCTTCAATGCGGCCACTCAGGAATTGGTCTTAACCTTGCCGCAGATTTTAAACGAGGCAGAGGACAAC
ACCTCCTCCTATTTGCTTGAATTGCAAGATATGGGAGTGCCAGTTGTGGAAAAGGGGCGCAATCGTTTAGCTGCGGATCC
AGAAGATATTGGCAATTACAAGGCGCTTTTGTCGCGTGTGATTGAGCTTAACCGCTCTGCTATTGACCAAGAATTATCTA
AAGAAGAGCAGACCTTTTGGTCAGTTGCTGTTCGCTATTTACGCCAAAAATTGGCAAAAGAAGGACTTACGATTCCTGAA
GTGAACGATAAGATGCAGACCAAGCAGGTTGCTGCAGAGGTTATGGCAGCACGTTTTCCAATAGATCAACCTTTAAATCT
ATCATCGTCTGCCCTGACAACTTTTTACAATAATCAGTATCTTTATTTCCTTCAATATGTCCTTGGTTTGCAAGAGCTTG
AAACGATTCATCCTGATGCTAGAAATCATGGGACTTATTTGCACCGCGTGTTTGAATTGGTTATGCAAGATCAATCTACT
GATGATTTTGACAGTAAATTAAATCGTGCCATTGATATAACCAACCATGAGGATAGCTTTCACTTGGTTTATAATGAAGA
TGAGGAAAGTCGCTATGCTTTGGGTATTTTAGAAGATATTGCTCGTAGTACGGCTACCATTTTAAAAGGGGATAATCCTG
TTCAGGTAGAAAGTGAAGAAGAAGCCTTTGAGTTAATGCTGGATCAAACTGTTAAAATCAGAGGGGTTATTGATCGCATT
GATCGCTTGTCAGATGGCAGTTTAGGAATTGTTGATTATAAATCAAGTAAAAATACCTTTGATCTGCAAAAATTTTACAA
TGGACTCAGTCCGCAGTTAGTGACTTATATAGAAGCTCTTCGGTCTTGTAAAAATTTGAATGAGACAGATAAGATTTTTG
GAGCCATGTATCTTCATATGCAGGAACCTAAAACTGATTTAGCCAATATGAAATCCATCGAAAAAATTCCGGAAACGGTT
CATAAGAATTTAAGTTATAAGGGACTCTTTTTAGAAGATGAAAAAGCACATTTGGCTAATGGGAAATACCATTTGCATGA
TGCTGTCTATAGTCAAAAAGAAGTTGATTTGCTGCTTGATTATAATAAAAGACTCTATCGCAGTGCCGCAAAGCAAATCA
GAAAAGGAAACTTTCTCATTAACCCCTACAGTCAGGATGGCAAATCTGTTCAGGGAGAACAGCTGAAGGCTATTACACAT
TTTGAAGCAGATCGCCACATGCCTTATGCTCGTAAACTTTATCAGCTGCCACGCAAAGAAAAACGTCAGGGTTTCTTGGC
GTTAATGCAGTCTAAAAAAGAGGAGGAAGGCAATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1024)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.455

99.352

0.442