Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL78_RS04520 Genome accession   NZ_CP042390
Coordinates   850808..851353 (+) Length   181 a.a.
NCBI ID   WP_048700346.1    Uniprot ID   -
Organism   Leuconostoc lactis strain CBA3626     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 845808..856353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL78_RS04490 (FGL78_04490) - 845850..846713 (+) 864 WP_146976109.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  FGL78_RS04495 (FGL78_04495) - 846735..847301 (+) 567 WP_029510104.1 ECF-type riboflavin transporter substrate-binding protein -
  FGL78_RS04500 (FGL78_04500) - 847348..849093 (+) 1746 WP_146976113.1 ABC transporter ATP-binding protein -
  FGL78_RS04505 (FGL78_04505) - 849086..849919 (+) 834 WP_146976115.1 energy-coupling factor transporter transmembrane component T -
  FGL78_RS04510 (FGL78_04510) - 850006..850311 (+) 306 WP_010002910.1 hypothetical protein -
  FGL78_RS04515 (FGL78_04515) rpsF 850478..850774 (+) 297 WP_010003903.1 30S ribosomal protein S6 -
  FGL78_RS04520 (FGL78_04520) ssb 850808..851353 (+) 546 WP_048700346.1 single-stranded DNA-binding protein Machinery gene
  FGL78_RS04525 (FGL78_04525) rpsR 851390..851674 (+) 285 WP_004904499.1 30S ribosomal protein S18 -
  FGL78_RS04530 (FGL78_04530) - 851826..853853 (+) 2028 WP_068851049.1 DHH family phosphoesterase -
  FGL78_RS04535 (FGL78_04535) rplI 853911..854363 (+) 453 WP_029510109.1 50S ribosomal protein L9 -
  FGL78_RS04540 (FGL78_04540) dnaB 854366..855832 (+) 1467 WP_146976117.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19531.35 Da        Isoelectric Point: 4.6689

>NTDB_id=377625 FGL78_RS04520 WP_048700346.1 850808..851353(+) (ssb) [Leuconostoc lactis strain CBA3626]
MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQAGEREADFINAVIWRKAAENFANFTGKGALVAIEGRLQTR
NYENNQGQRVYVTEVVVDNFSLLESRAESDKRRAQNGSSEPSHQGGASFGAPSDNAFGGVDPFASASQANPQATTPTNDA
PNPFAASGKTEIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=377625 FGL78_RS04520 WP_048700346.1 850808..851353(+) (ssb) [Leuconostoc lactis strain CBA3626]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGTGATGTGGAATTACGTTATACCCAATCGGGTACAGCAGTCGG
CACGTTTAGTTTGGCGGTTAACCGCCAGTTCACCAACCAAGCTGGTGAACGTGAAGCTGACTTTATTAACGCCGTGATTT
GGCGTAAAGCAGCTGAAAATTTTGCAAACTTTACTGGAAAAGGTGCACTAGTTGCCATTGAAGGTCGTTTGCAAACACGG
AATTATGAAAACAACCAAGGACAACGTGTTTACGTGACCGAAGTTGTCGTTGATAATTTCTCATTACTTGAATCACGTGC
TGAAAGTGATAAGCGACGTGCCCAAAACGGGTCGTCAGAACCATCTCATCAAGGTGGTGCGTCATTCGGTGCGCCAAGTG
ATAATGCATTTGGTGGCGTTGATCCGTTTGCTTCGGCTAGCCAAGCTAACCCACAAGCGACAACACCAACAAATGATGCC
CCTAACCCATTTGCGGCGAGCGGCAAAACAGAAATTGATATATCAGATGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.431

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.591

100

0.536

Multiple sequence alignment