Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL79_RS00075 Genome accession   NZ_CP042389
Coordinates   9420..9836 (-) Length   138 a.a.
NCBI ID   WP_146954914.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain CBA3617     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4420..14836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL79_RS00030 (FGL79_00030) - 4427..4852 (-) 426 WP_146954907.1 ArpU family phage packaging/lysis transcriptional regulator -
  FGL79_RS09870 - 4930..5082 (-) 153 WP_186738765.1 hypothetical protein -
  FGL79_RS00035 (FGL79_00035) - 5082..5399 (-) 318 WP_222433717.1 MazG-like family protein -
  FGL79_RS00040 (FGL79_00040) - 5396..5761 (-) 366 WP_146954908.1 YopX family protein -
  FGL79_RS00045 (FGL79_00045) - 5780..5995 (-) 216 WP_146954909.1 hypothetical protein -
  FGL79_RS09875 - 6127..6300 (-) 174 WP_186738767.1 hypothetical protein -
  FGL79_RS00050 (FGL79_00050) - 6293..7120 (-) 828 WP_146954910.1 DUF1642 domain-containing protein -
  FGL79_RS00055 (FGL79_00055) - 7117..7824 (-) 708 WP_146954911.1 hypothetical protein -
  FGL79_RS00060 (FGL79_00060) - 7838..8050 (-) 213 WP_146954912.1 hypothetical protein -
  FGL79_RS00065 (FGL79_00065) - 8040..8438 (-) 399 WP_146955488.1 RusA family crossover junction endodeoxyribonuclease -
  FGL79_RS00070 (FGL79_00070) - 8450..9409 (-) 960 WP_146954913.1 DnaD domain-containing protein -
  FGL79_RS00075 (FGL79_00075) ssb 9420..9836 (-) 417 WP_146954914.1 single-stranded DNA-binding protein Machinery gene
  FGL79_RS10040 (FGL79_00080) - 9848..10717 (-) 870 WP_222433718.1 PD-(D/E)XK nuclease-like domain-containing protein -
  FGL79_RS00085 (FGL79_00085) bet 10599..11366 (-) 768 WP_146954916.1 phage recombination protein Bet -
  FGL79_RS00090 (FGL79_00090) - 11366..11563 (-) 198 WP_146954917.1 hypothetical protein -
  FGL79_RS09880 - 11855..12007 (-) 153 WP_186738769.1 BOW99_gp33 family protein -
  FGL79_RS00095 (FGL79_00095) - 12004..12555 (-) 552 WP_237023253.1 helix-turn-helix transcriptional regulator -
  FGL79_RS09885 - 12615..12779 (-) 165 WP_186738771.1 hypothetical protein -
  FGL79_RS00100 (FGL79_00100) - 12776..13000 (-) 225 WP_146954918.1 helix-turn-helix domain-containing protein -
  FGL79_RS00105 (FGL79_00105) - 13138..13464 (+) 327 WP_146954919.1 helix-turn-helix domain-containing protein -
  FGL79_RS00110 (FGL79_00110) - 13467..13880 (+) 414 WP_146954920.1 ImmA/IrrE family metallo-endopeptidase -
  FGL79_RS00115 (FGL79_00115) - 13909..14745 (+) 837 WP_146954921.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15051.56 Da        Isoelectric Point: 5.6245

>NTDB_id=377578 FGL79_RS00075 WP_146954914.1 9420..9836(-) (ssb) [Latilactobacillus curvatus strain CBA3617]
MNSVNLIGNLTADIKLETSSNQTHYARFSLAVRRDANHTDFINCVAFGKTAEMLSNQLKGSKIGVSGSWQTGSYQNQQGQ
KVYTNDCSVYRVYFLSPLNKDADTCNTAPSSAAPANNYVDPFANNGQAIDISDNDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=377578 FGL79_RS00075 WP_146954914.1 9420..9836(-) (ssb) [Latilactobacillus curvatus strain CBA3617]
ATGAATTCAGTAAACTTAATCGGCAACTTAACAGCCGATATTAAATTAGAAACAAGCAGCAACCAAACACACTATGCAAG
ATTCTCTTTAGCGGTAAGACGTGATGCTAATCACACAGATTTCATTAATTGTGTTGCGTTTGGAAAGACAGCAGAAATGC
TAAGTAATCAGTTAAAAGGTTCAAAGATTGGTGTTAGTGGCAGCTGGCAAACAGGCAGCTATCAAAACCAACAAGGACAA
AAGGTTTATACCAACGATTGTAGCGTTTATCGAGTTTATTTCTTATCACCATTGAATAAAGATGCTGACACGTGCAATAC
AGCGCCAAGTTCAGCAGCACCAGCTAATAACTATGTTGATCCATTCGCAAATAACGGACAAGCAATTGATATTTCGGACA
ACGATTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

40.828

100

0.5
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.842

100

0.457

Multiple sequence alignment