Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL90_RS04665 Genome accession   NZ_CP042371
Coordinates   964730..965278 (-) Length   182 a.a.
NCBI ID   WP_010619026.1    Uniprot ID   -
Organism   Secundilactobacillus malefermentans strain CBA3618     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 959730..970278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL90_RS04645 (FGL90_04645) dnaB 960294..961673 (-) 1380 WP_010619030.1 replicative DNA helicase -
  FGL90_RS04650 (FGL90_04650) rplI 961751..962203 (-) 453 WP_010619029.1 50S ribosomal protein L9 -
  FGL90_RS04655 (FGL90_04655) - 962293..964317 (-) 2025 WP_147657111.1 DHH family phosphoesterase -
  FGL90_RS04660 (FGL90_04660) rpsR 964450..964689 (-) 240 WP_010619027.1 30S ribosomal protein S18 -
  FGL90_RS04665 (FGL90_04665) ssb 964730..965278 (-) 549 WP_010619026.1 single-stranded DNA-binding protein Machinery gene
  FGL90_RS04670 (FGL90_04670) rpsF 965327..965623 (-) 297 WP_010619025.1 30S ribosomal protein S6 -
  FGL90_RS04675 (FGL90_04675) gyrA 965860..968313 (-) 2454 WP_404814664.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19630.07 Da        Isoelectric Point: 4.3667

>NTDB_id=377482 FGL90_RS04665 WP_010619026.1 964730..965278(-) (ssb) [Secundilactobacillus malefermentans strain CBA3618]
MINRAVLTGRLTRDVDLRYTPSGAAVGNFTLAVDRQFTNQSNEREADFINCVIWRKSAENFTNFTHKGSLVGIEGRIQTR
NYENQQGTRVYVTEVVVENFALLEPRSASNNAGGNNNFSAPSDNNAPQGDTNPFGTPNQGGSAPAAGNNTNNSAPSADNS
NQNDPFANNGQSIDISDDDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=377482 FGL90_RS04665 WP_010619026.1 964730..965278(-) (ssb) [Secundilactobacillus malefermentans strain CBA3618]
ATGATCAACCGAGCAGTACTTACGGGACGCTTGACAAGAGATGTTGATTTACGTTACACACCAAGTGGTGCAGCAGTAGG
AAACTTTACGTTGGCTGTTGATCGGCAATTTACCAATCAAAGCAACGAACGTGAAGCGGACTTTATCAACTGTGTTATTT
GGAGAAAGTCTGCTGAGAACTTCACCAACTTCACCCACAAAGGGTCGTTAGTTGGTATTGAAGGTCGCATTCAGACTCGA
AATTACGAAAATCAACAAGGTACAAGAGTTTACGTGACTGAGGTTGTTGTTGAAAACTTTGCACTATTAGAGCCACGTTC
GGCTTCAAATAATGCGGGTGGTAACAACAATTTCAGTGCTCCTAGTGATAATAATGCTCCTCAAGGAGATACCAATCCAT
TTGGCACGCCTAATCAAGGTGGGTCAGCACCTGCTGCTGGTAACAATACCAACAACAGTGCCCCATCAGCTGATAACAGC
AACCAAAATGATCCATTTGCAAATAATGGACAATCAATTGATATCTCTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.324

100

0.654
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.56

Multiple sequence alignment