Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FGL90_RS02105 Genome accession   NZ_CP042371
Coordinates   404959..406722 (-) Length   587 a.a.
NCBI ID   WP_147656652.1    Uniprot ID   -
Organism   Secundilactobacillus malefermentans strain CBA3618     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 399959..411722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL90_RS02090 (FGL90_02090) - 401937..402638 (-) 702 WP_010619545.1 ABC transporter ATP-binding protein -
  FGL90_RS02095 (FGL90_02095) - 402744..403193 (-) 450 WP_010619544.1 MarR family winged helix-turn-helix transcriptional regulator -
  FGL90_RS02100 (FGL90_02100) rcrQ 403205..404959 (-) 1755 WP_147656650.1 ABC transporter ATP-binding protein Regulator
  FGL90_RS02105 (FGL90_02105) rcrP 404959..406722 (-) 1764 WP_147656652.1 ABC transporter ATP-binding protein Regulator
  FGL90_RS02110 (FGL90_02110) - 406873..411663 (-) 4791 WP_010619541.1 MBG domain-containing protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64880.84 Da        Isoelectric Point: 6.8629

>NTDB_id=377476 FGL90_RS02105 WP_147656652.1 404959..406722(-) (rcrP) [Secundilactobacillus malefermentans strain CBA3618]
MFKILKRLTGKDYAYIGISTLFIALQVWLELEIPGYMTKITRALETPGTTTGDILDPGSKMILYAVLSLFSSIIVGYFAA
RVAGGFAARLRKELYDQVLDYSTQDITQFSVPSLLTRSTNDITQLQMFIAIGMQVMIKAPITAVWAMTKIAGKGWQWSTA
TAVAVVALIVMLAVILTLVQPRFKIVQRLTDRLNLVTRENLNGIRVVHAYNAEKFQNDKFDKANNDLTDTNMFALRALAL
MNPGMSLISSGLTLAVYAIGAYLIDAASGMQKLTYFSNMIVFSSYAMQIIFSFLMLSFVFVIMPRVTVSAGRINEVLAVA
PSIKYPATKPVEKEANRIIEFKDVSFHFSDAEEAAVKHLTFKTKPGQTLALIGSTGSGKSTVLNLIARRYEVSEGQVLID
GVDVSDYPESDLNDKIGYAPQKAVLFSGDIRSNIDFGTSTNKSDKLSDDEIKDALDTAQALDFVERKHDQLDANVAQHGD
NFSGGQKQRLAIARAVARKPEILMFDDSFSALDYATDRKLRETLNKKNHETTKVIVAQRISTIMDADQIIVLDNGNVAGI
GTHDELLKDNKVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=377476 FGL90_RS02105 WP_147656652.1 404959..406722(-) (rcrP) [Secundilactobacillus malefermentans strain CBA3618]
ATGTTTAAAATATTGAAACGACTAACTGGTAAAGATTATGCTTATATCGGAATCAGTACGTTGTTTATCGCGTTACAGGT
TTGGCTGGAATTGGAAATTCCGGGCTATATGACCAAGATTACTAGAGCACTTGAAACACCAGGAACCACTACTGGAGACA
TCTTGGATCCAGGAAGTAAAATGATTCTCTATGCTGTTTTGAGTTTGTTTTCTTCTATTATAGTGGGTTATTTTGCTGCT
CGTGTGGCCGGTGGCTTTGCTGCTAGGTTACGAAAAGAACTGTATGACCAAGTCTTGGACTACTCAACCCAGGACATCAC
GCAGTTTTCTGTACCGAGTCTATTAACTCGGTCAACCAATGATATTACGCAATTACAAATGTTTATTGCGATTGGGATGC
AAGTGATGATTAAAGCACCAATTACGGCGGTTTGGGCAATGACTAAGATTGCCGGCAAAGGTTGGCAGTGGTCAACAGCT
ACCGCAGTTGCAGTTGTCGCTTTGATTGTCATGTTGGCCGTCATCTTGACGTTGGTCCAACCTCGATTCAAAATTGTTCA
ACGGTTAACTGACCGTTTGAACTTGGTGACCCGTGAAAACTTGAACGGAATTCGAGTTGTTCACGCGTATAACGCTGAAA
AATTTCAAAATGATAAATTTGATAAAGCTAATAATGATTTAACGGATACCAACATGTTTGCCTTACGTGCGTTGGCGCTA
ATGAACCCCGGAATGTCACTTATTTCAAGTGGCTTAACTTTGGCTGTTTACGCCATCGGAGCGTACTTAATTGATGCTGC
TTCAGGGATGCAAAAGTTAACCTATTTCAGTAATATGATTGTGTTCTCTTCATATGCAATGCAAATTATATTCTCATTCT
TGATGCTTTCGTTTGTGTTCGTCATTATGCCTCGTGTAACTGTTTCTGCAGGCCGAATTAACGAAGTGTTGGCTGTTGCG
CCAAGTATCAAATATCCCGCAACAAAACCAGTTGAAAAAGAAGCCAACAGAATTATTGAATTTAAGGATGTTAGTTTTCA
TTTTAGCGATGCAGAAGAAGCCGCAGTTAAACACTTAACTTTCAAAACTAAGCCTGGACAAACTCTTGCACTTATTGGAT
CAACCGGTAGTGGAAAGAGTACGGTTCTTAACTTGATTGCCCGACGTTATGAAGTTTCAGAGGGACAAGTATTGATCGAT
GGTGTTGATGTTAGCGACTATCCTGAATCGGATTTGAACGACAAAATTGGCTATGCACCACAAAAAGCAGTGCTATTTAG
TGGTGATATTCGGTCAAATATTGATTTTGGAACGAGTACAAATAAATCCGATAAGCTTTCCGATGATGAAATCAAAGATG
CTTTGGATACTGCACAGGCACTGGACTTTGTTGAAAGAAAACATGATCAGCTGGATGCAAACGTTGCCCAACATGGGGAT
AACTTCTCTGGTGGTCAAAAGCAGCGTTTGGCAATTGCCCGTGCCGTTGCCCGCAAACCAGAAATATTGATGTTCGATGA
TTCATTTTCAGCACTGGATTACGCAACGGATCGGAAGTTACGTGAGACATTAAATAAAAAGAATCATGAAACGACAAAGG
TTATTGTTGCACAGCGAATCAGTACGATTATGGATGCTGATCAAATTATCGTTCTCGATAACGGAAATGTCGCTGGAATT
GGAACCCATGACGAATTATTGAAAGATAACAAGGTTTACCAAGAAATTGCGTACTCACAACTTTCAAAGGAGGAGCTTGC
CTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(357-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.017

100

0.56

Multiple sequence alignment