Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FGL90_RS02100 Genome accession   NZ_CP042371
Coordinates   403205..404959 (-) Length   584 a.a.
NCBI ID   WP_147656650.1    Uniprot ID   -
Organism   Secundilactobacillus malefermentans strain CBA3618     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 398205..409959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL90_RS02080 (FGL90_02080) - 398280..399101 (-) 822 WP_147656648.1 ABC transporter permease subunit -
  FGL90_RS02085 (FGL90_02085) - 399363..401927 (-) 2565 WP_010619546.1 ABC transporter permease -
  FGL90_RS02090 (FGL90_02090) - 401937..402638 (-) 702 WP_010619545.1 ABC transporter ATP-binding protein -
  FGL90_RS02095 (FGL90_02095) - 402744..403193 (-) 450 WP_010619544.1 MarR family winged helix-turn-helix transcriptional regulator -
  FGL90_RS02100 (FGL90_02100) rcrQ 403205..404959 (-) 1755 WP_147656650.1 ABC transporter ATP-binding protein Regulator
  FGL90_RS02105 (FGL90_02105) rcrP 404959..406722 (-) 1764 WP_147656652.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64698.66 Da        Isoelectric Point: 6.7838

>NTDB_id=377475 FGL90_RS02100 WP_147656650.1 403205..404959(-) (rcrQ) [Secundilactobacillus malefermentans strain CBA3618]
MEKQTKNFGEVMKSYIKPYSSTLIFALIFAILGNIPTIIGPNRLSKVTNLITAGLRGKIDLKQITSIVIFLAVIYVIGAA
FSYAQGFIMATGTQKFTKDLREKISLKINKLPLSYFDKHDEGDTLSRITNDLDTFGQAINQSLGALISSVVLLVGTIAMM
IYTNWILSLTAIVSSLLGFAITIFLLAHSQKYFAAQQNRLADVSGYVEEIYTGHEVVKTYNNTNRVKKRFNLLNGQLFDA
VWKAQFISGIMQPLMGFIGNFGYVMVSVVGSVLVLNGHISIGVVVAFMIYVRIFTQPLSQITQAFASLQTAQAGLKRVLE
FVTEDEADDREDVTPLPEKVQGKIDFDHVSFGYNERTTVIKDFSAHVKPGQKVAIVGPTGSGKTTLISVLMNFYNFDKGT
IKIDDVDVKQLSSGSIRNQFDMVLQDTWLFEDTIMNNLKYNGENISDEQVIDAAKAVGVDHFIRTLPKGYDTILDDTVTL
SVGQKQLMTIARALVRNRPILILDEATSSVDTRTEEQLQKAMDLLTKGRTSLVIAHRLSTIKNADNILVLKSGEIIESGT
HDELMDANGFYANMYNSQFESLTA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=377475 FGL90_RS02100 WP_147656650.1 403205..404959(-) (rcrQ) [Secundilactobacillus malefermentans strain CBA3618]
ATGGAAAAACAGACTAAAAACTTTGGCGAAGTGATGAAGAGCTACATTAAGCCATACAGCTCCACTTTGATTTTTGCGCT
AATATTTGCAATTTTAGGAAACATTCCAACCATTATCGGACCTAATCGATTGAGTAAAGTAACCAATCTGATTACCGCAG
GGTTGCGAGGAAAAATTGATCTAAAACAGATTACGAGTATCGTCATTTTCCTAGCAGTTATTTACGTAATTGGAGCAGCG
TTCTCGTATGCGCAAGGGTTCATAATGGCAACTGGGACTCAGAAATTCACGAAAGACTTACGTGAAAAGATTAGTTTAAA
GATTAATAAGTTGCCTTTATCCTACTTTGATAAGCATGACGAAGGGGATACCTTAAGTCGAATTACCAATGACTTGGATA
CCTTTGGCCAAGCAATTAACCAAAGTTTAGGCGCCCTGATTTCTTCAGTTGTGCTCTTAGTTGGAACGATTGCCATGATG
ATTTATACCAACTGGATTTTGAGTTTAACGGCGATTGTGTCGTCGCTACTTGGTTTTGCAATCACCATTTTCCTTTTGGC
GCACTCGCAGAAATACTTTGCTGCTCAACAGAACCGTTTGGCAGACGTATCTGGTTACGTTGAGGAAATTTATACTGGCC
ATGAAGTTGTTAAAACTTACAATAATACAAACCGAGTTAAGAAGCGGTTTAATTTATTAAATGGTCAATTGTTTGATGCC
GTTTGGAAAGCACAATTTATTTCAGGAATCATGCAACCACTGATGGGCTTCATTGGTAACTTTGGCTACGTCATGGTCAG
TGTGGTTGGATCAGTTCTTGTCCTAAATGGGCATATTTCGATTGGTGTCGTTGTTGCCTTCATGATTTACGTGCGAATCT
TTACTCAGCCACTTTCCCAAATTACCCAGGCATTTGCTAGTTTGCAGACAGCTCAAGCTGGTCTCAAACGAGTGCTTGAA
TTTGTTACAGAGGATGAGGCAGATGATCGTGAAGATGTCACACCACTTCCTGAAAAGGTACAAGGGAAGATTGACTTCGA
CCACGTTTCGTTTGGTTACAATGAGCGAACAACGGTCATAAAAGACTTTAGCGCCCACGTTAAACCTGGACAAAAGGTGG
CCATTGTTGGGCCAACTGGTTCTGGAAAGACAACCTTAATTAGTGTGTTGATGAACTTCTACAACTTTGATAAGGGAACC
ATCAAGATTGACGATGTAGATGTTAAGCAGCTTTCAAGTGGGTCAATCCGAAATCAATTTGATATGGTTTTACAAGATAC
TTGGTTATTTGAAGATACCATCATGAATAACCTGAAGTATAACGGTGAGAACATATCCGACGAACAGGTGATTGATGCTG
CGAAAGCAGTTGGGGTTGACCACTTTATTCGAACGTTGCCTAAGGGCTACGACACCATTTTGGATGATACGGTTACCTTA
TCCGTTGGACAGAAGCAATTGATGACGATTGCCCGCGCATTAGTTCGAAACCGACCAATTTTGATTTTGGATGAAGCAAC
GAGTTCAGTCGATACACGAACTGAAGAGCAACTCCAAAAGGCAATGGATCTTTTGACAAAGGGTCGGACTTCTCTTGTCA
TTGCGCATAGACTCTCAACCATTAAGAATGCCGATAACATATTGGTTCTTAAGAGTGGAGAAATTATTGAGTCCGGAACT
CATGACGAGTTAATGGATGCAAATGGCTTCTACGCGAACATGTACAACAGTCAATTTGAAAGTTTGACTGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.995

99.144

0.565

Multiple sequence alignment