Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HA248_RS00205 Genome accession   NZ_CP050175
Coordinates   36370..37140 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain PZ900701590     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31370..42140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HA248_RS00185 (HA248_00185) - 33335..33772 (+) 438 WP_000076480.1 CoA-binding protein -
  HA248_RS11260 - 33813..34016 (+) 204 WP_050091241.1 hypothetical protein -
  HA248_RS00195 (HA248_00195) - 34045..35055 (-) 1011 WP_000009178.1 YeiH family protein -
  HA248_RS00200 (HA248_00200) - 35204..36373 (+) 1170 WP_033707872.1 pyridoxal phosphate-dependent aminotransferase -
  HA248_RS00205 (HA248_00205) recO 36370..37140 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  HA248_RS00210 (HA248_00210) plsX 37137..38129 (+) 993 WP_000717462.1 phosphate acyltransferase PlsX -
  HA248_RS00215 (HA248_00215) - 38135..38368 (+) 234 WP_000136447.1 acyl carrier protein -
  HA248_RS00220 (HA248_00220) - 38414..38704 (+) 291 Protein_35 IS5/IS1182 family transposase -
  HA248_RS00225 (HA248_00225) blpU 38907..39137 (+) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  HA248_RS11670 - 39140..39265 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  HA248_RS11265 - 39676..39870 (+) 195 WP_000756776.1 hypothetical protein -
  HA248_RS00230 (HA248_00230) comR 39891..40784 (+) 894 WP_033707871.1 XRE family transcriptional regulator Regulator
  HA248_RS00235 (HA248_00235) - 41327..41623 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=377469 HA248_RS00205 WP_000616164.1 36370..37140(+) (recO) [Streptococcus pneumoniae strain PZ900701590]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=377469 HA248_RS00205 WP_000616164.1 36370..37140(+) (recO) [Streptococcus pneumoniae strain PZ900701590]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992