Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RPSI07_RS18595 Genome accession   NC_014311
Coordinates   2369004..2371541 (-) Length   845 a.a.
NCBI ID   WP_013212917.1    Uniprot ID   -
Organism   Ralstonia solanacearum PSI07     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2364004..2376541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPSI07_RS18575 (RPSI07_2252) - 2364512..2365426 (-) 915 WP_013212913.1 hypothetical protein -
  RPSI07_RS18580 (RPSI07_2253) - 2365510..2366346 (-) 837 WP_013212914.1 transglutaminase family protein -
  RPSI07_RS18585 (RPSI07_2254) - 2366404..2367354 (-) 951 WP_013212915.1 alpha-E domain-containing protein -
  RPSI07_RS18590 (RPSI07_2255) - 2367417..2368898 (-) 1482 WP_013212916.1 circularly permuted type 2 ATP-grasp protein -
  RPSI07_RS18595 (RPSI07_2256) comA 2369004..2371541 (-) 2538 WP_013212917.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RPSI07_RS18600 (RPSI07_2257) - 2371551..2372366 (-) 816 WP_013212918.1 TatD family hydrolase -
  RPSI07_RS18605 (RPSI07_2258) lolD 2372395..2373129 (-) 735 WP_013212919.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RPSI07_RS18610 (RPSI07_2259) - 2373122..2374372 (-) 1251 WP_013212920.1 lipoprotein-releasing ABC transporter permease subunit -
  RPSI07_RS18615 (RPSI07_2260) - 2374445..2375524 (+) 1080 WP_048817651.1 hypothetical protein -

Sequence

Protein


Download         Length: 845 a.a.        Molecular weight: 90980.84 Da        Isoelectric Point: 10.0527

>NTDB_id=37743 RPSI07_RS18595 WP_013212917.1 2369004..2371541(-) (comA) [Ralstonia solanacearum PSI07]
MRALLIGFVAGCMVLQTRPSLVPVWQPGLLGLACLLAMAVLRRGGRLPRLVPVMAVLAAACVGFGWSDWRAQQRLSVVLA
PEWEGKAIRATGVVAELPQVTEDATRFLFHIESSDAGGAVPPRVRLSWYGKRSWNERRREAGAATDRRAGIPDLQPGQRW
QLTLRLKRPHSLMNPGGFDGEYAMLADTIRAAGYVHTGKRARNVLMGEAGAGFDLHVERWRAAVRRHILAALPDARYAPV
MVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFAALWMALWRHSFGLARWLRTPLPLRMPAQRAGAIAAM
AAALAYCLLAGMGVPAQRTLLMFATVAVARLTDRSVPASLSLCWAAAAVALVDPWAVMSAGFWLSFGAVAVIFLAARIVA
ADAWEDGRRPAWPIRAWRGLRGAARIQLAVTFGLLPLTLLLFQQVSVVSAVANALAIPVVSFVTTPLALIGAALPEPWSP
PVLAWAEASFGWLVSWLDGLAMPGWSVWVAPVAPAWAWMPAVVGVLLLLVPGGCRAWAWRAQGAILLLPMLLARAPVPPP
GEFRMVAFDIGQGAATLVETAGHRLLFDTGPGHGDLADAADRVIVPYLRRHGVQAIDTLVVSHEDSDHAGGTETVMAEVP
VRTMLASWPPGHRLDEQARAHGIDTAGCLAGQRWVWDGVAFEILHPVQAPPDRAPVSSNARSCVLRIAGARYAAMLAGDI
GSAQEMALIAAEAPERLMADILLVPHHGSKTSSSGAFLDAVSPQVAIFQVGYRNRYGHPHPQVWQRYGARDIERLRTDAA
GAVVIETRGDALDVRTARSMRPRYWSSALEVAALADATEPTDAQP

Nucleotide


Download         Length: 2538 bp        

>NTDB_id=37743 RPSI07_RS18595 WP_013212917.1 2369004..2371541(-) (comA) [Ralstonia solanacearum PSI07]
ATGCGCGCCCTGCTGATCGGCTTTGTCGCGGGGTGCATGGTGCTGCAGACGCGGCCGTCGCTGGTGCCGGTGTGGCAGCC
GGGGCTGCTCGGGCTCGCTTGTCTGCTGGCGATGGCGGTGCTGCGGCGCGGGGGGCGGTTGCCGAGGCTTGTTCCCGTGA
TGGCCGTGCTGGCGGCGGCTTGCGTCGGCTTCGGCTGGAGTGACTGGCGCGCGCAGCAGCGGCTGTCCGTGGTGCTGGCG
CCCGAATGGGAGGGCAAGGCCATCCGCGCAACGGGCGTTGTGGCCGAGCTGCCCCAGGTCACCGAGGACGCCACGCGTTT
CCTGTTTCACATCGAATCCAGCGACGCGGGCGGCGCCGTGCCGCCGCGCGTGCGCCTGTCGTGGTATGGCAAGCGCAGCT
GGAACGAGCGGCGGCGGGAGGCCGGGGCGGCCACCGATCGCCGCGCCGGCATCCCCGACCTGCAGCCCGGCCAGCGCTGG
CAGCTGACACTGCGGCTCAAGCGGCCGCACAGCCTGATGAACCCGGGCGGCTTCGACGGCGAATACGCGATGCTCGCCGA
CACGATCCGCGCCGCGGGCTACGTGCACACCGGCAAACGCGCGCGCAATGTGCTGATGGGCGAAGCCGGCGCCGGTTTCG
ATCTGCATGTCGAGCGCTGGCGTGCCGCGGTGCGGCGACATATCCTCGCCGCATTGCCCGATGCGCGCTATGCGCCCGTG
ATGGTCGCCCTGGTGGTGGGCGACCAGAGCGGCATCGCCCAGGCAGATTGGGAGCGCTTCCGCCGCACTGGCATCAGCCA
TCTCGTCAGCATTTCCGGTCTGCACATCACGATGATCGCCGGGCTGTTCGCCGCGCTCTGGATGGCGCTGTGGCGGCACT
CGTTCGGTCTGGCCCGCTGGCTGCGCACGCCGCTGCCGCTGCGCATGCCGGCCCAGCGCGCCGGCGCCATCGCCGCGATG
GCGGCGGCGCTCGCCTATTGCCTGCTGGCGGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGTTCGCGACCGTCGC
CGTGGCGCGGCTGACCGATCGCAGCGTGCCGGCCAGCCTGTCGCTGTGCTGGGCCGCGGCCGCGGTGGCGCTGGTGGATC
CGTGGGCGGTCATGTCGGCGGGATTCTGGCTGTCGTTCGGCGCGGTGGCGGTCATCTTCCTGGCCGCGCGGATCGTTGCC
GCCGATGCATGGGAGGATGGCCGCCGGCCCGCCTGGCCGATACGCGCCTGGCGCGGCCTGCGCGGCGCCGCGCGCATCCA
GCTGGCCGTGACGTTCGGCCTGCTGCCGTTGACGCTGCTGCTGTTCCAGCAGGTCTCGGTGGTGTCGGCCGTGGCCAACG
CGCTCGCGATCCCGGTGGTCAGCTTTGTCACGACGCCGCTGGCGTTGATTGGCGCGGCGCTGCCCGAGCCGTGGTCGCCG
CCGGTGCTGGCGTGGGCCGAGGCCAGCTTCGGGTGGCTCGTGTCGTGGCTGGATGGGCTGGCGATGCCGGGCTGGTCCGT
ATGGGTGGCGCCCGTCGCACCCGCCTGGGCGTGGATGCCGGCCGTCGTCGGTGTGCTGTTGCTGCTCGTGCCGGGGGGGT
GTCGCGCCTGGGCCTGGCGGGCGCAGGGCGCGATCCTGTTGCTGCCGATGCTGCTGGCGCGCGCACCCGTGCCGCCGCCG
GGCGAGTTCCGGATGGTGGCATTCGACATCGGCCAGGGCGCCGCCACGCTGGTCGAAACGGCCGGCCACCGGCTGCTGTT
CGACACCGGCCCCGGCCATGGCGACCTTGCCGATGCCGCCGACCGCGTGATCGTCCCGTATCTGCGCAGACATGGCGTAC
AGGCCATCGATACGCTGGTGGTCAGCCACGAGGACAGCGACCACGCCGGCGGCACCGAAACGGTGATGGCCGAGGTGCCG
GTGCGCACCATGCTGGCGTCCTGGCCGCCCGGCCACCGGCTGGACGAGCAGGCCCGCGCGCACGGCATCGATACCGCTGG
CTGCCTGGCCGGACAGCGTTGGGTGTGGGACGGTGTCGCCTTCGAAATCCTGCATCCGGTGCAGGCGCCCCCCGATAGGG
CGCCCGTGTCCAGCAACGCCCGCAGCTGCGTGCTGCGCATCGCCGGCGCACGCTATGCCGCCATGCTGGCCGGCGACATC
GGCAGCGCCCAGGAAATGGCGCTGATCGCCGCCGAAGCGCCGGAGCGGCTCATGGCAGACATCTTGCTTGTGCCCCACCA
CGGCAGCAAGACGAGCTCCAGCGGCGCGTTTTTGGACGCGGTCTCTCCGCAGGTGGCGATTTTCCAGGTCGGCTACCGCA
ACCGGTACGGTCATCCGCATCCGCAGGTCTGGCAGCGCTACGGCGCGCGCGACATCGAGCGGCTGCGCACCGATGCAGCC
GGGGCCGTCGTCATCGAGACGCGCGGCGATGCGCTGGATGTGCGGACGGCGCGGTCGATGCGTCCGCGCTACTGGTCCTC
GGCGCTGGAGGTCGCAGCCCTGGCAGACGCCACGGAGCCCACGGACGCGCAGCCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(244-530)

Domain of unknown function (DUF4131) (DUF4131)

(23-197)

Beta-lactamase superfamily domain (Lactamase_B_2)

(583-743)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

89.492

100

0.897

Multiple sequence alignment