Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FR838_RS08160 Genome accession   NZ_CP042364
Coordinates   1701558..1702187 (+) Length   209 a.a.
NCBI ID   WP_016806074.1    Uniprot ID   -
Organism   Acinetobacter pittii strain C54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1696558..1707187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR838_RS08145 (FR838_08145) - 1697621..1698604 (-) 984 WP_005078349.1 putative solute-binding protein -
  FR838_RS08150 (FR838_08150) - 1698684..1699499 (-) 816 WP_005078350.1 NAD-dependent epimerase/dehydratase family protein -
  FR838_RS08155 (FR838_08155) recG 1699520..1701565 (+) 2046 WP_005078352.1 ATP-dependent DNA helicase RecG -
  FR838_RS08160 (FR838_08160) comF 1701558..1702187 (+) 630 WP_016806074.1 ComF family protein Machinery gene
  FR838_RS08165 (FR838_08165) mutT 1702189..1702590 (-) 402 WP_005078355.1 NUDIX hydrolase -
  FR838_RS08170 (FR838_08170) - 1702605..1703186 (-) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  FR838_RS08175 (FR838_08175) - 1703344..1704357 (+) 1014 WP_005078356.1 magnesium and cobalt transport protein CorA -
  FR838_RS08180 (FR838_08180) - 1704430..1704717 (-) 288 WP_005078357.1 STAS domain-containing protein -
  FR838_RS08185 (FR838_08185) - 1704729..1705370 (-) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  FR838_RS08190 (FR838_08190) - 1705397..1706077 (-) 681 WP_002116957.1 outer membrane lipid asymmetry maintenance protein MlaD -
  FR838_RS08195 (FR838_08195) mlaE 1706077..1706853 (-) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24556.76 Da        Isoelectric Point: 9.9657

>NTDB_id=377429 FR838_RS08160 WP_016806074.1 1701558..1702187(+) (comF) [Acinetobacter pittii strain C54]
MFNFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTVCLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=377429 FR838_RS08160 WP_016806074.1 1701558..1702187(+) (comF) [Acinetobacter pittii strain C54]
ATGTTTAATTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCGATTC
AACGTTTAAACGAGCACTCTCAAAAAGGGCTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACCGTGTGCCTAGCAGCGACGCCGAAGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823

Multiple sequence alignment