Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   FRG19_RS08735 Genome accession   NZ_CP042341
Coordinates   1857722..1858297 (-) Length   191 a.a.
NCBI ID   WP_049426935.1    Uniprot ID   A0A7Z7YXB1
Organism   Staphylococcus capitis strain BN2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1852722..1863297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRG19_RS08705 (FRG19_08705) - 1853392..1853526 (-) 135 WP_030065142.1 gallidermin family lantibiotic -
  FRG19_RS08710 (FRG19_08710) - 1854598..1854963 (+) 366 WP_030065139.1 hypothetical protein -
  FRG19_RS08715 (FRG19_08715) - 1854984..1855655 (+) 672 WP_047796099.1 Ltp family lipoprotein -
  FRG19_RS08720 (FRG19_08720) - 1856262..1856789 (+) 528 WP_030065136.1 Ltp family lipoprotein -
  FRG19_RS08735 (FRG19_08740) comK/comK1 1857722..1858297 (-) 576 WP_049426935.1 competence protein ComK Regulator
  FRG19_RS08740 (FRG19_08745) - 1858517..1858735 (+) 219 WP_030065132.1 IDEAL domain-containing protein -
  FRG19_RS08745 (FRG19_08750) - 1858816..1859802 (-) 987 WP_047796044.1 lipoate--protein ligase -
  FRG19_RS08750 (FRG19_08755) - 1860007..1860192 (+) 186 WP_002433441.1 YkvS family protein -
  FRG19_RS08755 (FRG19_08760) - 1860198..1860800 (+) 603 WP_002433304.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  FRG19_RS08760 (FRG19_08765) - 1860897..1862405 (-) 1509 WP_030065128.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22680.86 Da        Isoelectric Point: 9.6955

>NTDB_id=377169 FRG19_RS08735 WP_049426935.1 1857722..1858297(-) (comK/comK1) [Staphylococcus capitis strain BN2]
MTIFSESIYVIRKGDMLIRPRYDEYQQTSGSEIIRFDKSRKVSPFKVQRIIERSCKFYGNSYLSKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQDENIWINMHYIDSIKELKNRKSKVIFANGESFILNVSYHSLWHQYTNAIIYYYMVDKHARM
KSNNPEQPIDYNQSSLNIFEALSRYSLLDDK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=377169 FRG19_RS08735 WP_049426935.1 1857722..1858297(-) (comK/comK1) [Staphylococcus capitis strain BN2]
ATGACTATTTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGACATGTTAATTCGACCAAGGTATGATGAATATCAGCA
AACTTCAGGTTCAGAAATTATAAGATTTGATAAATCACGAAAGGTGAGTCCATTTAAAGTTCAAAGAATTATCGAGAGGT
CCTGCAAATTCTATGGTAATAGCTACCTAAGTAAAAAATCTGAAACTAATAGAATTACAGGTATCTCTAGTAAACCACCT
ATTTTACTTACCCCTTTATTTCCAACTTATTTTTTCCCAACACATTCTGATCGACAAGACGAAAACATCTGGATAAACAT
GCATTATATCGACAGCATCAAAGAACTTAAAAATCGTAAAAGTAAAGTGATATTTGCTAATGGTGAATCCTTTATATTAA
ACGTTTCATATCATAGCTTATGGCATCAATATACAAATGCGATTATTTATTATTATATGGTAGATAAACATGCACGTATG
AAATCAAATAATCCAGAACAACCCATTGATTATAATCAATCATCGTTAAATATATTTGAAGCTCTCTCAAGGTATTCTCT
TTTAGATGATAAGTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z7YXB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.72

98.953

0.759
  comK/comK1 Staphylococcus aureus N315

76.72

98.953

0.759

Multiple sequence alignment