Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FRG19_RS07705 Genome accession   NZ_CP042341
Coordinates   1636262..1637134 (-) Length   290 a.a.
NCBI ID   WP_049428539.1    Uniprot ID   -
Organism   Staphylococcus capitis strain BN2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1631262..1642134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRG19_RS07690 (FRG19_07685) xerC 1631554..1632444 (-) 891 WP_023350394.1 tyrosine recombinase XerC -
  FRG19_RS07695 (FRG19_07690) trmFO 1632681..1633988 (-) 1308 WP_030064791.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FRG19_RS07700 (FRG19_07695) topA 1634009..1636084 (-) 2076 WP_194251468.1 type I DNA topoisomerase -
  FRG19_RS07705 (FRG19_07700) dprA 1636262..1637134 (-) 873 WP_049428539.1 DNA-processing protein DprA Machinery gene
  FRG19_RS07710 (FRG19_07705) sucD 1637359..1638267 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  FRG19_RS07715 (FRG19_07710) sucC 1638289..1639455 (-) 1167 WP_194251240.1 ADP-forming succinate--CoA ligase subunit beta -
  FRG19_RS07720 (FRG19_07715) - 1639563..1640333 (-) 771 WP_030064786.1 ribonuclease HII -
  FRG19_RS07725 (FRG19_07720) ylqF 1640317..1641200 (-) 884 Protein_1490 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33454.71 Da        Isoelectric Point: 9.5761

>NTDB_id=377168 FRG19_RS07705 WP_049428539.1 1636262..1637134(-) (dprA) [Staphylococcus capitis strain BN2]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNEMIEDWAKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIDSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNKLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYPPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDESSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=377168 FRG19_RS07705 WP_049428539.1 1636262..1637134(-) (dprA) [Staphylococcus capitis strain BN2]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAATGCACTAATTCAAAATGAGATGATTGAGGATTGGGCTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGACAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGACTCAAGAAAGTCAACTTTATATACAACTCAAGCTTTGGAAT
ACCTTTTCCCATCATTTAAATCACTGAAAATGACGATTATTTCCGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTCGCACTAAAAAATAAACTTCCAACAATAGGTGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCTTTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCCACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAAAGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

58.681

99.31

0.583
  dprA Staphylococcus aureus MW2

58.681

99.31

0.583

Multiple sequence alignment