Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HBA20_RS29525 Genome accession   NZ_CP050147
Coordinates   6262871..6263467 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain A5803     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6257871..6268467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA20_RS29505 (HBA20_29565) aroK 6259002..6259520 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HBA20_RS29510 (HBA20_29570) pilQ 6259532..6261676 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  HBA20_RS29515 (HBA20_29575) comL/pilP 6261730..6262254 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HBA20_RS29520 (HBA20_29580) pilO 6262251..6262874 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HBA20_RS29525 (HBA20_29585) pilN 6262871..6263467 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HBA20_RS29530 (HBA20_29590) pilM 6263467..6264531 (-) 1065 WP_058154770.1 type IV pilus assembly protein PilM Machinery gene
  HBA20_RS29535 (HBA20_29595) - 6264716..6267187 (+) 2472 WP_058154773.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=377165 HBA20_RS29525 WP_003095839.1 6262871..6263467(-) (pilN) [Pseudomonas aeruginosa strain A5803]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=377165 HBA20_RS29525 WP_003095839.1 6262871..6263467(-) (pilN) [Pseudomonas aeruginosa strain A5803]
ATGGCACGGATCAACCTTCTACCCTGGCGAGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369