Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FRE64_RS03880 Genome accession   NZ_CP042326
Coordinates   835060..836574 (+) Length   504 a.a.
NCBI ID   WP_146294753.1    Uniprot ID   A0A5B8NJJ9
Organism   Euhalothece natronophila Z-M001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 830060..841574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRE64_RS03865 (FRE64_03865) - 832750..833448 (+) 699 WP_146294751.1 anti-virulence regulator CigR family protein -
  FRE64_RS03870 (FRE64_03870) - 833453..834091 (-) 639 WP_146294752.1 cofactor assembly of complex C subunit B -
  FRE64_RS03875 (FRE64_03875) rpaB 834116..834850 (-) 735 WP_146297270.1 response regulator transcription factor RpaB -
  FRE64_RS03880 (FRE64_03880) radA 835060..836574 (+) 1515 WP_146294753.1 DNA repair protein RadA Machinery gene
  FRE64_RS03885 (FRE64_03885) pyrH 836696..837409 (+) 714 WP_146294754.1 UMP kinase -
  FRE64_RS03890 (FRE64_03890) frr 837406..837954 (+) 549 WP_146294755.1 ribosome recycling factor -
  FRE64_RS03895 (FRE64_03895) pdhA 838135..839169 (+) 1035 WP_146294756.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  FRE64_RS03900 (FRE64_03900) - 839262..839681 (-) 420 WP_146294757.1 type II toxin-antitoxin system VapC family toxin -
  FRE64_RS03905 (FRE64_03905) - 839678..839926 (-) 249 WP_146294758.1 ribbon-helix-helix protein, CopG family -
  FRE64_RS03910 (FRE64_03910) - 840019..841446 (-) 1428 WP_146297271.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54329.72 Da        Isoelectric Point: 5.0916

>NTDB_id=377093 FRE64_RS03880 WP_146294753.1 835060..836574(+) (radA) [Euhalothece natronophila Z-M001]
MSKAKVIYVCSACGAEHNQWFGKCSSCGAYGTLEEEFVTSVNANPRTGWQSNKDSTTVTHNKPPKARISLKFSQIKDDEQ
PRYPSGYGELDRVLGGGIVPGSLVLLGGDPGIGKSTLLLQVANQTANSQRTLYVSAEESGQQVKLRASRLGVGLTDSPDD
QVEESNGRKPKSMSHENLYVLPETDLEEILRELESLKPLLAIIDSIQTLYFASLSSAPGSVAQVRECTSALMQVAKRENI
TLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEIGVFEMVDHGLREVENPSELFLGNRDE
AVPGTGIVVACEGTRPIVVELQALVSPTSYTSPRRATTGVDYNRLQQILAVLEKRVGIPLSKLDAYVATAGGLGVEEPAA
DLGIAVAVVASFRDRIVDPRTALIGEVGLGGQVRLVSQLELRIKEAAKLGFKRAIVPQGQSLPDLGIEIITVSKVIDAIV
AAIPPQPRYGENDEVSISEEDEEG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=377093 FRE64_RS03880 WP_146294753.1 835060..836574(+) (radA) [Euhalothece natronophila Z-M001]
ATGTCTAAAGCGAAAGTTATCTATGTTTGCAGTGCTTGTGGTGCTGAACATAACCAATGGTTTGGAAAATGTTCTAGCTG
TGGAGCGTATGGGACATTAGAGGAAGAATTTGTCACTTCAGTGAATGCGAACCCTCGTACAGGATGGCAGTCGAATAAAG
ATTCTACCACTGTTACTCATAATAAGCCTCCGAAGGCTCGGATTTCCCTCAAGTTTTCTCAAATTAAAGATGATGAACAG
CCTCGCTATCCTTCAGGTTATGGGGAGTTAGATCGCGTGTTAGGTGGCGGAATTGTGCCAGGTTCCTTGGTTTTACTTGG
GGGTGATCCTGGGATTGGCAAGTCAACGCTATTATTACAGGTGGCAAACCAAACCGCCAATAGCCAGCGAACCTTATATG
TTTCTGCGGAAGAGTCTGGGCAGCAGGTAAAGTTACGGGCTTCTCGCTTAGGAGTGGGGTTAACTGATTCTCCTGATGAT
CAGGTAGAGGAGAGTAATGGTCGTAAGCCCAAAAGTATGAGCCATGAAAATCTTTATGTGTTACCAGAAACGGATTTAGA
AGAAATTTTACGGGAATTAGAATCTCTCAAACCCCTACTAGCGATTATAGATAGTATTCAAACCCTTTATTTTGCCTCTT
TAAGTTCTGCACCTGGTTCAGTTGCCCAAGTGAGGGAGTGTACTTCGGCGTTAATGCAGGTGGCAAAACGGGAGAATATT
ACCCTGTTAATTGTTGGTCATGTGACCAAAGAAGGCGCGATCGCGGGGCCAAGGGTATTAGAACATTTAGTGGATACTGT
ACTGTATTTTGAGGGCGATCGCTATGCGTCTCACCGCTTATTACGGTCGGTGAAAAATCGCTTTGGGGCAACCCATGAAA
TTGGGGTGTTTGAAATGGTGGATCATGGCTTGCGAGAGGTGGAAAATCCCTCAGAGTTATTTTTAGGGAATCGGGATGAA
GCAGTGCCAGGAACAGGAATTGTGGTGGCTTGTGAAGGCACTCGCCCCATTGTTGTGGAGTTACAAGCTCTTGTCAGTCC
TACCAGTTATACTTCCCCCCGTCGGGCAACAACAGGGGTAGATTATAACCGACTGCAGCAAATTTTAGCAGTTTTAGAGA
AACGGGTGGGGATTCCCTTATCAAAGTTAGATGCTTATGTGGCAACGGCTGGGGGGTTAGGGGTAGAAGAACCAGCAGCA
GATTTAGGGATTGCTGTCGCTGTGGTTGCTAGTTTTCGCGATCGCATTGTGGATCCGCGCACGGCTTTAATTGGAGAAGT
GGGCTTAGGGGGACAAGTGCGCTTAGTTTCCCAGTTAGAATTACGGATTAAAGAGGCGGCGAAATTAGGGTTTAAACGCG
CGATCGTTCCCCAAGGGCAAAGTCTTCCTGATCTGGGCATTGAAATTATTACCGTTAGCAAGGTTATTGATGCCATTGTC
GCTGCTATTCCGCCTCAACCCCGTTATGGAGAAAATGATGAGGTTTCCATTTCAGAAGAAGACGAAGAAGGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(398-458)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(84-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8NJJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

96.032

0.48
  radA Streptococcus mitis SK321

46.764

95.04

0.444
  radA Streptococcus pneumoniae Rx1

46.764

95.04

0.444
  radA Streptococcus pneumoniae D39

46.764

95.04

0.444
  radA Streptococcus pneumoniae R6

46.764

95.04

0.444
  radA Streptococcus pneumoniae TIGR4

46.764

95.04

0.444
  radA Streptococcus mitis NCTC 12261

47.598

90.873

0.433

Multiple sequence alignment