Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HBA48_RS06990 Genome accession   NZ_CP050135
Coordinates   1351672..1352331 (-) Length   219 a.a.
NCBI ID   WP_026036228.1    Uniprot ID   B6SE77
Organism   Kingella kingae strain ATCC 23331     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1346672..1357331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS06965 (HBA48_07000) aroB 1346695..1347777 (-) 1083 WP_003789801.1 3-dehydroquinate synthase -
  HBA48_RS06970 (HBA48_07005) - 1347777..1348289 (-) 513 WP_003789800.1 shikimate kinase -
  HBA48_RS06975 (HBA48_07010) pilQ 1348346..1350448 (-) 2103 WP_003789799.1 type IV pilus secretin PilQ Machinery gene
  HBA48_RS06980 (HBA48_07015) pilP 1350482..1351012 (-) 531 WP_003785826.1 pilus assembly protein PilP Machinery gene
  HBA48_RS06985 (HBA48_07020) pilO 1351046..1351669 (-) 624 WP_003785825.1 type 4a pilus biogenesis protein PilO -
  HBA48_RS06990 (HBA48_07025) pilN 1351672..1352331 (-) 660 WP_026036228.1 PilN domain-containing protein Machinery gene
  HBA48_RS06995 (HBA48_07030) pilM 1352333..1353334 (-) 1002 WP_243763631.1 type IV pilus assembly protein PilM -
  HBA48_RS07000 (HBA48_07035) - 1353577..1355946 (+) 2370 WP_166503266.1 penicillin-binding protein 1A -
  HBA48_RS07005 (HBA48_07040) serB 1356022..1356858 (-) 837 WP_003789793.1 phosphoserine phosphatase SerB -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23515.11 Da        Isoelectric Point: 9.2613

>NTDB_id=376997 HBA48_RS06990 WP_026036228.1 1351672..1352331(-) (pilN) [Kingella kingae strain ATCC 23331]
MNLIKINLLPYREMEEQKKKKQFQTIMVIGAAAGLVAAGLIYSSLAGMILNQQGRNESLQAGIATLDKELEEIKTLNEQK
RNFLERRQRIAELDNKRFEGARIIDTLNQLVPDGAYLLSLKGDASKNLVSNKYAITGKAISDNKVAVLMTALPSTGIFEQ
PELVKIEKTDDGQQFILNALLLEQKVIVPDVVGGGASVSSGAAAASVTSTPATSASGGK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=376997 HBA48_RS06990 WP_026036228.1 1351672..1352331(-) (pilN) [Kingella kingae strain ATCC 23331]
ATGAATTTGATTAAGATTAACTTGCTTCCCTATCGTGAGATGGAAGAGCAAAAGAAAAAGAAACAATTTCAAACAATCAT
GGTAATTGGTGCAGCAGCAGGTTTGGTTGCTGCGGGTCTGATTTACTCATCATTGGCTGGTATGATACTGAATCAGCAGG
GGCGTAACGAAAGTTTGCAGGCTGGTATTGCCACGCTAGATAAAGAATTGGAAGAAATTAAAACGCTCAATGAGCAAAAA
CGTAATTTTTTGGAACGTCGTCAACGTATCGCAGAATTGGATAATAAGCGATTTGAGGGTGCGCGAATTATTGATACATT
AAATCAACTTGTTCCCGACGGTGCTTATTTGTTGTCTTTGAAAGGCGATGCTTCTAAGAATTTGGTAAGTAATAAGTATG
CTATTACTGGTAAAGCGATTAGCGATAACAAAGTTGCTGTTTTAATGACTGCTTTACCAAGTACGGGTATTTTTGAACAG
CCAGAATTGGTGAAAATTGAAAAAACCGATGATGGTCAACAATTTATCTTGAATGCATTATTATTGGAACAAAAAGTGAT
TGTTCCTGATGTGGTGGGTGGTGGTGCATCTGTTTCATCGGGTGCAGCAGCTGCGTCGGTAACATCAACACCTGCTACAA
GTGCATCGGGAGGTAAATAA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6SE77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

45.556

82.192

0.374