Detailed information NTG0376995

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FLM29_RS09055
• Genome accession: NZ_CP042319
• Coordinates: 1879799..1880599 (-)
• Length: 266 a.a.
• NCBI ID: WP_017901157.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain 68-17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1874799..1885599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FLM29_RS09035	dksA	1875379..1875834 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
FLM29_RS09040	sfsA	1875997..1876713 (-)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
FLM29_RS09045	thpR	1876713..1877249 (-)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
FLM29_RS09050	hrpB	1877322..1879751 (+)	2430	WP_130948086.1	ATP-dependent helicase HrpB	-
FLM29_RS09055	pilD	1879799..1880599 (-)	801	WP_017901157.1	A24 family peptidase	Machinery gene
FLM29_RS09060	-	1880614..1881342 (-)	729	WP_057213467.1	type II secretion system protein N	-
FLM29_RS09065	-	1881332..1881817 (-)	486	WP_004204409.1	type II secretion system protein M	-
FLM29_RS09070	gspL	1881810..1883006 (-)	1197	WP_057213470.1	type II secretion system protein GspL	-
FLM29_RS09075	gspK	1882999..1883979 (-)	981	WP_077260551.1	type II secretion system minor pseudopilin GspK	-
FLM29_RS09080	gspJ	1883976..1884572 (-)	597	WP_032426022.1	type II secretion system minor pseudopilin GspJ	-
FLM29_RS09085	gspI	1884569..1884934 (-)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
FLM29_RS09090	gspH	1884931..1885446 (-)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29338.86 Da
• Isoelectric Point: 8.8894

>NTDB_id=376995 FLM29_RS09055 WP_017901157.1 1879799..1880599(-) (pilD) [Klebsiella quasipneumoniae strain 68-17]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=376995 FLM29_RS09055 WP_017901157.1 1879799..1880599(-) (pilD) [Klebsiella quasipneumoniae strain 68-17]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCCCTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCTTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGCCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-230)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425