Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   HBA48_RS04115 Genome accession   NZ_CP050135
Coordinates   781472..782740 (-) Length   422 a.a.
NCBI ID   WP_003790652.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23331     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 776472..787740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS04080 (HBA48_04100) - 776960..777223 (-) 264 WP_206520653.1 tannase/feruloyl esterase family alpha/beta hydrolase -
  HBA48_RS04085 (HBA48_04105) - 777235..777387 (-) 153 WP_164538106.1 hypothetical protein -
  HBA48_RS04095 (HBA48_04115) hisD 777951..779243 (+) 1293 Protein_782 histidinol dehydrogenase -
  HBA48_RS04100 (HBA48_04120) - 779307..779603 (-) 297 WP_003790658.1 hypothetical protein -
  HBA48_RS04105 (HBA48_04125) - 779675..780313 (-) 639 WP_243763647.1 hypothetical protein -
  HBA48_RS04110 (HBA48_04130) nfsA 780625..781371 (-) 747 WP_003790654.1 oxygen-insensitive NADPH nitroreductase -
  HBA48_RS04115 (HBA48_04135) clpX 781472..782740 (-) 1269 WP_003790652.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HBA48_RS04120 (HBA48_04140) pnuC 782869..783615 (-) 747 WP_003790650.1 nicotinamide riboside transporter PnuC -
  HBA48_RS04125 (HBA48_04145) - 783719..784696 (+) 978 WP_003790648.1 ABC transporter ATP-binding protein -
  HBA48_RS04130 (HBA48_04150) - 784693..785883 (+) 1191 WP_003790646.1 hypothetical protein -
  HBA48_RS04135 (HBA48_04155) trpB 785945..787150 (+) 1206 WP_032828165.1 tryptophan synthase subunit beta -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46091.86 Da        Isoelectric Point: 5.3842

>NTDB_id=376983 HBA48_RS04115 WP_003790652.1 781472..782740(-) (clpX) [Kingella kingae strain ATCC 23331]
MNKKEHACSFCGKAEHEVKMLIEGEDSFICNECVAACNTMLQDESKAKTTSTGKTKAEQDNTPLPTPAQLVAQLNEHVIG
QEQAKKSLAVAVYNHYKRLRQPDTADKVELSKSNVLMIGPTGSGKTYMVQSLARHLNVPFAMADATTLTEAGYVGEDVES
IVTKLLGNCDFDVEKAQKGIIYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRRNPNQQFIAVDT
SNILFICGGAFAGLDKVIRQRTEKGGIGFGANVHSKDEDSRISELFEQVEPEDLIRFGLIPELIGRLPVLTSLAELDEAA
LVRILTEPKNALVKQYQALFAMEKKALQIDDDALRAVAQLAMKRKTGARGLRSIMERALLETMYLLPTLDDVATVVVNKN
VIENQVLPKFLRADGGEVVPSI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=376983 HBA48_RS04115 WP_003790652.1 781472..782740(-) (clpX) [Kingella kingae strain ATCC 23331]
ATGAACAAAAAAGAACACGCTTGCTCGTTTTGTGGCAAAGCCGAACACGAAGTCAAAATGTTAATTGAAGGCGAAGATTC
GTTTATTTGCAACGAATGCGTAGCAGCCTGCAACACGATGTTGCAAGACGAATCCAAAGCGAAAACGACATCAACAGGCA
AAACCAAAGCCGAACAAGACAACACGCCCTTACCCACGCCAGCGCAACTGGTCGCGCAATTAAACGAACACGTTATCGGG
CAAGAACAAGCGAAAAAATCGCTGGCGGTGGCGGTGTATAATCACTACAAACGCCTGCGCCAACCCGATACGGCAGACAA
AGTGGAATTGTCCAAATCCAATGTGTTGATGATTGGGCCAACTGGCTCGGGCAAAACTTATATGGTGCAATCGTTGGCGC
GACATTTGAACGTGCCGTTTGCGATGGCGGACGCAACCACGCTGACCGAAGCGGGCTATGTGGGCGAAGACGTGGAAAGC
ATTGTGACCAAACTGCTGGGCAACTGCGATTTTGACGTGGAAAAAGCGCAAAAAGGCATTATTTATATTGATGAAATTGA
CAAAATTTCGCGCAAAAGCGACAGCCCGTCTATCACGCGTGATGTGTCGGGCGAAGGCGTGCAACAAGCCTTGCTTAAAC
TGATTGAAGGCACGGTTGCCAATGTGCCGCCACAAGGTGGTCGCCGCAATCCCAATCAACAATTTATCGCGGTGGACACC
AGCAATATTTTGTTTATTTGCGGTGGCGCGTTTGCAGGTTTGGACAAAGTGATTCGCCAGCGCACCGAAAAAGGCGGCAT
TGGCTTTGGCGCGAACGTGCATAGCAAAGACGAAGACAGCCGCATTAGCGAACTGTTTGAACAGGTTGAACCCGAAGATT
TAATCCGTTTTGGCTTAATCCCTGAATTGATTGGTCGCTTGCCTGTGCTGACTTCGTTGGCAGAATTGGACGAAGCGGCG
TTGGTTCGCATTTTAACCGAACCGAAAAACGCGCTAGTCAAACAGTATCAAGCCTTGTTCGCCATGGAAAAAAAAGCCTT
GCAAATTGATGACGATGCGTTGCGAGCAGTCGCGCAGTTGGCAATGAAACGCAAAACAGGGGCGCGTGGTTTGCGCTCTA
TTATGGAACGCGCTTTGCTGGAAACGATGTATTTGTTGCCGACTTTGGACGATGTTGCTACCGTGGTCGTAAACAAAAAT
GTGATTGAAAACCAAGTGTTACCGAAGTTTTTACGCGCAGATGGCGGCGAAGTTGTGCCGTCTATTTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(316-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(112-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

54.774

94.313

0.517
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.234

95.261

0.507