Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HBA50_RS09945 Genome accession   NZ_CP050133
Coordinates   2003947..2004744 (-) Length   265 a.a.
NCBI ID   WP_045498372.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1998947..2009744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS09925 (HBA50_09925) purD 1999072..2000334 (-) 1263 WP_045498364.1 phosphoribosylamine--glycine ligase -
  HBA50_RS09930 (HBA50_09930) lytF 2000710..2002656 (+) 1947 WP_045498366.1 GBS Bsp-like repeat-containing protein Regulator
  HBA50_RS09935 (HBA50_09935) - 2002723..2002965 (-) 243 WP_005591354.1 acyl carrier protein -
  HBA50_RS09940 (HBA50_09940) plsX 2002962..2003966 (-) 1005 WP_045498369.1 phosphate acyltransferase PlsX -
  HBA50_RS09945 (HBA50_09945) recO 2003947..2004744 (-) 798 WP_045498372.1 DNA repair protein RecO Machinery gene
  HBA50_RS09950 (HBA50_09950) - 2004737..2005909 (-) 1173 WP_045498375.1 pyridoxal phosphate-dependent aminotransferase -
  HBA50_RS09955 (HBA50_09955) srtB 2006021..2006851 (-) 831 WP_045498378.1 class B sortase, LPKTxAVK-specific -
  HBA50_RS09960 (HBA50_09960) abpA 2006943..2007554 (-) 612 WP_045498381.1 amylase-binding adhesin AbpA -
  HBA50_RS09965 (HBA50_09965) - 2007680..2008648 (-) 969 WP_045498384.1 ribose-phosphate diphosphokinase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 30559.81 Da        Isoelectric Point: 5.9403

>NTDB_id=376957 HBA50_RS09945 WP_045498372.1 2003947..2004744(-) (recO) [Streptococcus cristatus ATCC 51100]
MLRPLTSKSLILYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAAELLMKINDDGLSYIEDYQAVESYG
QIKGDLFVMAYASYVAALADASIQDNQPDPALFAFLQKTLDLMNQGLDHEVLTNIFEIQILSRFGLSLNFHDCVFCHRTG
LPFDFSFQYGGVLCSEHYHKDAHRSHLNPNIPFLLNQFQAVQFSELETISLKPEIKRQIRDFIDQLYDEYVGIHLKSKKF
IDSLGDWGSILQDKHEEEQHEKNSY

Nucleotide


Download         Length: 798 bp        

>NTDB_id=376957 HBA50_RS09945 WP_045498372.1 2003947..2004744(-) (recO) [Streptococcus cristatus ATCC 51100]
ATGCTTAGACCGTTAACGAGCAAGAGTTTGATTCTCTATAATCGGAATTTCCGGGAAGATGATAAGCTGGTCAAGATCTT
TACGGAACAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCTGGAAAGTCTAAGCTGGCACCAGTCATCCAGCCTCTGA
CGGCAGCAGAACTCTTGATGAAAATCAATGATGATGGACTCAGCTATATCGAAGATTACCAAGCTGTGGAAAGTTACGGG
CAAATCAAGGGCGATCTCTTTGTCATGGCTTATGCCAGCTATGTGGCGGCTCTAGCAGATGCTAGTATTCAAGACAATCA
GCCAGATCCAGCCCTCTTTGCCTTCCTGCAAAAGACACTGGATTTGATGAATCAAGGGCTGGATCATGAGGTTTTGACAA
ATATTTTTGAAATTCAGATTTTATCTCGCTTTGGCCTTTCTCTGAATTTCCATGACTGTGTTTTTTGCCATCGGACAGGT
CTGCCTTTTGATTTTTCCTTTCAATATGGCGGGGTGCTCTGTTCAGAGCATTATCACAAGGATGCTCATCGCAGTCATCT
TAATCCCAATATTCCTTTTTTGCTCAATCAGTTTCAGGCGGTTCAGTTTAGTGAGCTGGAGACGATTTCGCTTAAGCCGG
AAATCAAGCGACAGATCAGGGACTTTATAGATCAACTTTATGATGAATACGTGGGTATTCATCTCAAATCAAAGAAATTT
ATCGACTCTCTGGGCGACTGGGGCAGTATTTTACAAGACAAACATGAGGAAGAACAGCATGAAAAAAATAGCTATTGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(6-79)

Recombination protein O C terminal (RecO_C)

(85-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

73.622

95.849

0.706