Detailed information    

insolico Bioinformatically predicted

Overview


Name   lytF   Type   Regulator
Locus tag   HBA50_RS09930 Genome accession   NZ_CP050133
Coordinates   2000710..2002656 (+) Length   648 a.a.
NCBI ID   WP_045498366.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context


Location: 1995710..2007656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS09905 (HBA50_09905) - 1995922..1997043 (-) 1122 WP_045498343.1 DUF262 domain-containing protein -
  HBA50_RS09910 (HBA50_09910) - 1997080..1997307 (-) 228 WP_045498347.1 hypothetical protein -
  HBA50_RS09915 (HBA50_09915) purK 1997317..1998408 (-) 1092 WP_045498350.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  HBA50_RS09920 (HBA50_09920) purE 1998395..1998883 (-) 489 WP_045498353.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  HBA50_RS09925 (HBA50_09925) purD 1999072..2000334 (-) 1263 WP_045498364.1 phosphoribosylamine--glycine ligase -
  HBA50_RS09930 (HBA50_09930) lytF 2000710..2002656 (+) 1947 WP_045498366.1 GBS Bsp-like repeat-containing protein Regulator
  HBA50_RS09935 (HBA50_09935) - 2002723..2002965 (-) 243 WP_005591354.1 acyl carrier protein -
  HBA50_RS09940 (HBA50_09940) plsX 2002962..2003966 (-) 1005 WP_045498369.1 phosphate acyltransferase PlsX -
  HBA50_RS09945 (HBA50_09945) recO 2003947..2004744 (-) 798 WP_045498372.1 DNA repair protein RecO Machinery gene
  HBA50_RS09950 (HBA50_09950) - 2004737..2005909 (-) 1173 WP_045498375.1 pyridoxal phosphate-dependent aminotransferase -
  HBA50_RS09955 (HBA50_09955) srtB 2006021..2006851 (-) 831 WP_045498378.1 class B sortase, LPKTxAVK-specific -
  HBA50_RS09960 (HBA50_09960) abpA 2006943..2007554 (-) 612 WP_045498381.1 amylase-binding adhesin AbpA -

Sequence


Protein


Download         Length: 648 a.a.        Molecular weight: 71731.74 Da        Isoelectric Point: 9.0961

>NTDB_id=376956 HBA50_RS09930 WP_045498366.1 2000710..2002656(+) (lytF) [Streptococcus cristatus ATCC 51100]
MKKYQKLFLLSGAVLGLFASHSTAQAVTSTKTGNKVLGPTDRASNVTVNVTGDTAQIHYARSKAQVPYTISHAVWSDENG
QDDLKWYTTPQTSSTAIDLRQHAGYGTFHVHTYININGKMIGLNGTTFTVNKPAVKVSTNIVGQTGQIHFKRNKDQINSR
ILHAVWSDENGQDDLKWYNAGQDITEFTLSNHKGYGKYFVDTYENKNGKMIYQSGTTFHLEKPNPIIQTSFPEPGIMEIL
IKNLPESMYKVTVPTWSENKGQDDLQWYQAKKNPDGSYSVRVELKKHNYDTGTYHIHLYGESYVKPELTGLAGTSVTLDA
GKMPSQKDQKPLFSVENINQEEGTYTVKVTETAASKPIQSVRVPIWSTQNQSNIKWYEASNNGDGTFSAQFNIRNHQALS
GSYTNHIYVKYKDGSEHNYATDSVTLSAENIKAKVSINKISTYNYEVTVSDAFGPGTISLPTWSEVNGQDDIKWYTANKV
GNGLYKFTINTQQHAGNGLFHTHVYRNLNGQMTGLTGTSYQVDKPTTPEPTLYTPDYAGASSYPHGQCTWGAKVLAPWAG
PYWGNGGQWAASARAAGFRTGSTPQVGAIICWTDGGYGHVGVVTHVESNTRIQIKESNYAGKQYIGNFRGWFNPYAAGQG
AVSYIYPK

Nucleotide


Download         Length: 1947 bp        

>NTDB_id=376956 HBA50_RS09930 WP_045498366.1 2000710..2002656(+) (lytF) [Streptococcus cristatus ATCC 51100]
ATGAAGAAATATCAGAAGCTGTTTTTATTATCCGGAGCAGTCCTTGGGCTGTTTGCAAGTCATTCCACGGCTCAAGCTGT
TACATCGACTAAAACTGGAAACAAAGTCCTAGGCCCCACTGATCGTGCTAGCAATGTGACCGTCAATGTCACTGGGGATA
CAGCACAGATTCATTATGCCCGCTCCAAGGCTCAGGTTCCCTATACCATTTCCCACGCAGTCTGGTCCGACGAAAACGGA
CAGGATGATTTGAAATGGTACACCACGCCTCAAACATCCAGCACAGCCATTGACCTCCGGCAGCACGCTGGCTATGGCAC
TTTCCATGTTCATACTTACATTAATATCAACGGGAAAATGATTGGCTTGAATGGTACGACCTTTACTGTTAATAAGCCTG
CGGTTAAGGTTTCTACTAATATTGTCGGACAAACTGGTCAAATTCACTTTAAGCGCAATAAAGACCAGATAAACTCTCGT
ATTTTACATGCGGTCTGGTCTGATGAAAATGGACAAGATGACTTAAAATGGTATAATGCCGGACAAGATATCACCGAATT
TACACTTTCTAATCACAAGGGTTATGGAAAATATTTCGTAGATACTTATGAAAATAAAAATGGCAAAATGATTTACCAAT
CAGGCACCACTTTCCATCTAGAAAAGCCTAATCCTATCATTCAGACAAGTTTCCCTGAACCTGGCATTATGGAAATCCTT
ATCAAAAATCTTCCTGAATCCATGTATAAGGTCACTGTCCCAACCTGGTCTGAAAATAAGGGGCAAGATGATTTACAGTG
GTATCAAGCAAAGAAAAATCCTGATGGCAGTTACAGCGTCAGAGTCGAACTAAAAAAACACAATTACGATACAGGAACCT
ACCATATCCATCTCTATGGAGAAAGCTATGTTAAGCCTGAGTTAACAGGATTAGCAGGAACAAGTGTTACACTGGATGCT
GGTAAGATGCCTTCTCAAAAAGACCAAAAACCGCTTTTCTCTGTTGAAAATATCAATCAGGAAGAGGGAACCTACACTGT
AAAAGTAACCGAAACTGCAGCATCTAAGCCAATTCAATCCGTCCGCGTCCCTATTTGGAGTACCCAGAATCAAAGCAATA
TCAAGTGGTATGAGGCAAGCAACAATGGAGATGGGACTTTTTCTGCACAATTCAATATCCGTAACCACCAAGCCTTATCT
GGAAGCTACACTAATCATATCTACGTTAAGTACAAAGATGGTAGCGAGCATAACTATGCAACAGACAGCGTCACCCTATC
CGCTGAAAATATCAAAGCCAAGGTCTCTATCAATAAAATTTCTACCTACAATTACGAAGTGACCGTTTCCGATGCTTTCG
GACCAGGAACTATTTCTCTACCGACTTGGTCAGAAGTCAACGGCCAGGATGACATCAAATGGTACACTGCTAACAAAGTG
GGCAATGGCTTGTATAAATTTACCATCAATACGCAACAGCACGCTGGAAATGGACTCTTCCATACCCATGTTTACCGTAA
TCTCAATGGACAGATGACTGGACTTACAGGTACTAGCTATCAGGTTGATAAACCAACCACACCTGAGCCAACCCTCTACA
CACCTGATTATGCGGGAGCCTCCTCTTATCCTCATGGTCAGTGTACTTGGGGAGCAAAAGTACTGGCTCCTTGGGCTGGT
CCTTACTGGGGCAACGGTGGCCAATGGGCAGCTAGCGCACGCGCAGCTGGTTTCCGAACAGGAAGCACCCCACAAGTCGG
AGCCATCATCTGCTGGACCGATGGCGGCTATGGGCATGTTGGTGTTGTCACTCATGTCGAATCCAATACCCGCATCCAAA
TCAAAGAATCCAACTATGCAGGTAAACAGTATATTGGCAACTTCCGTGGCTGGTTCAATCCTTATGCCGCCGGTCAAGGA
GCTGTCAGCTATATTTATCCAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

45.333

81.019

0.367

  lytF Streptococcus gordonii str. Challis substr. CH1

45.385

80.247

0.364