Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   HBA50_RS08395 Genome accession   NZ_CP050133
Coordinates   1692509..1693555 (-) Length   348 a.a.
NCBI ID   WP_045498541.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687509..1698555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS08385 (HBA50_08385) trmB 1691029..1691667 (-) 639 WP_045498545.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  HBA50_RS08390 (HBA50_08390) ccrZ 1691664..1692458 (-) 795 WP_005591081.1 cell cycle regulator CcrZ -
  HBA50_RS08395 (HBA50_08395) pptB 1692509..1693555 (-) 1047 WP_045498541.1 ABC transporter permease Regulator
  HBA50_RS08400 (HBA50_08400) pptA 1693552..1694283 (-) 732 WP_005591084.1 ABC transporter ATP-binding protein Regulator
  HBA50_RS08405 (HBA50_08405) - 1694351..1694761 (+) 411 WP_005591086.1 HIT family protein -
  HBA50_RS08410 (HBA50_08410) - 1694771..1695046 (+) 276 WP_005591088.1 hypothetical protein -
  HBA50_RS08415 (HBA50_08415) comB 1695147..1696502 (-) 1356 WP_045498538.1 bacteriocin secretion accessory protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 40760.13 Da        Isoelectric Point: 10.5924

>NTDB_id=376942 HBA50_RS08395 WP_045498541.1 1692509..1693555(-) (pptB) [Streptococcus cristatus ATCC 51100]
MKEVFSKRKQDFRQRCLKYLRYVLNDHFVLFLLIFLGFLAVQYNQLLRNFPSQSWPIIVGLVLFSVVILPFGNIATYLEK
PDKLFLLVQERAVIEFVKGQIQRSYILFGLLQTLLLILLAPLFLALGLPFWDFGLYCLLMLLLKWLVFQFKGRRFFLFDR
LNWQYAIAAEEGRKQKVLRFFALFTNVKGISNSVKRRAYLDGLTRLLPKTHAKTWQNMFLRSYLRNGDLLPLTLRLLLLA
LLTIVFVSQSWIAAGFVVLFNYLLLFQLLALYEAFDYQYLTQLFPLNSKSKIKGARQVIIGVGHSVLLFETLVAVLFFQD
RMAVLAMLGVTIFLYLVYLPYKLKRLVD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=376942 HBA50_RS08395 WP_045498541.1 1692509..1693555(-) (pptB) [Streptococcus cristatus ATCC 51100]
ATGAAAGAAGTATTTTCTAAACGCAAGCAAGATTTCCGTCAGCGGTGTCTGAAGTATCTGCGCTATGTTCTCAATGATCA
CTTTGTCTTGTTTCTATTGATTTTTCTCGGATTTCTGGCGGTTCAGTACAATCAATTGCTGCGGAATTTTCCTAGTCAGT
CTTGGCCGATCATAGTAGGATTAGTCTTGTTTTCTGTGGTCATTCTTCCTTTTGGTAATATTGCAACCTATCTTGAGAAG
CCGGATAAGCTCTTCTTGCTAGTGCAGGAGCGGGCAGTTATTGAGTTTGTCAAGGGACAAATCCAGCGTTCGTATATTCT
CTTTGGTCTGCTGCAAACCTTGTTGCTGATCTTGCTAGCCCCCCTGTTTTTGGCTCTAGGTTTGCCATTCTGGGATTTTG
GGCTGTACTGTCTCCTTATGTTATTGCTAAAATGGCTAGTCTTTCAGTTCAAAGGGCGTCGCTTTTTCTTGTTTGATCGT
CTCAATTGGCAATATGCAATTGCAGCTGAGGAAGGCCGCAAGCAGAAAGTTCTTCGTTTCTTTGCCCTCTTTACAAATGT
GAAAGGCATTTCTAATAGTGTCAAAAGAAGAGCTTATTTGGACGGGCTGACGAGACTTTTGCCTAAGACCCATGCTAAGA
CTTGGCAAAACATGTTTTTACGCTCCTATCTTCGCAATGGCGATTTATTACCTCTGACCTTGCGTCTTCTACTTTTAGCC
CTCTTAACGATTGTCTTCGTCAGCCAGTCTTGGATTGCTGCAGGTTTTGTCGTCCTTTTTAACTATCTTCTGCTCTTTCA
GTTGCTGGCCTTGTATGAAGCCTTTGATTATCAGTATTTAACCCAGCTTTTCCCGCTGAATAGTAAGTCTAAAATCAAAG
GCGCAAGACAGGTCATCATAGGGGTTGGGCATAGTGTTTTGCTTTTTGAAACGCTAGTGGCAGTGCTCTTTTTCCAAGAT
AGAATGGCAGTGTTAGCAATGCTTGGAGTGACAATCTTTTTGTATCTAGTCTATTTGCCATATAAACTAAAAAGATTGGT
TGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-155)

Bacterial ABC transporter protein EcsB (EcsB)

(160-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.126

100

0.471
  pptB Streptococcus salivarius strain HSISS4

46.264

100

0.463