Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   HBA50_RS05655 Genome accession   NZ_CP050133
Coordinates   1133718..1135550 (-) Length   610 a.a.
NCBI ID   WP_045497602.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1128718..1140550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS05610 (HBA50_05610) - 1128859..1129164 (-) 306 WP_235285259.1 hypothetical protein -
  HBA50_RS05615 (HBA50_05615) - 1129274..1129669 (-) 396 WP_045497578.1 hypothetical protein -
  HBA50_RS05620 (HBA50_05620) - 1129777..1130109 (-) 333 WP_045497581.1 hypothetical protein -
  HBA50_RS05625 (HBA50_05625) - 1130150..1130515 (-) 366 WP_045497584.1 hypothetical protein -
  HBA50_RS05630 (HBA50_05630) - 1130689..1131255 (-) 567 WP_045497587.1 SMI1/KNR4 family protein -
  HBA50_RS05635 (HBA50_05635) - 1131298..1131609 (-) 312 WP_045497590.1 hypothetical protein -
  HBA50_RS05640 (HBA50_05640) - 1131798..1132403 (-) 606 WP_243746218.1 SMI1/KNR4 family protein -
  HBA50_RS05645 (HBA50_05645) - 1132489..1132944 (-) 456 WP_045497596.1 SMI1/KNR4 family protein -
  HBA50_RS05650 (HBA50_05650) - 1133097..1133603 (-) 507 WP_045497599.1 SMI1/KNR4 family protein -
  HBA50_RS05655 (HBA50_05655) uvrC 1133718..1135550 (-) 1833 WP_045497602.1 excinuclease ABC subunit UvrC Machinery gene
  HBA50_RS05660 (HBA50_05660) hemH 1135671..1136765 (-) 1095 WP_045497605.1 ferrochelatase -
  HBA50_RS05665 (HBA50_05665) - 1136961..1139405 (-) 2445 WP_045497608.1 CAP domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69933.55 Da        Isoelectric Point: 9.2026

>NTDB_id=376911 HBA50_RS05655 WP_045497602.1 1133718..1135550(-) (uvrC) [Streptococcus cristatus ATCC 51100]
MSTNKLIQSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDTKTEALVSEIEDFEFIVTESNIEALLLE
INLIKENKPKYNIMLKDDKSYPFIKITNEVYPRLIITRQVKKDGGLYFGPYPDVGAANEIKRLLDRIFTFKKCTNPPAKV
CFYYHLGQCEAHTICKRDSQYFKNMAQEVSDFLKGQDDKIIDELREKMNKTAAAMEFERAAEYRDLIQAIGTLRTKQRVM
AKDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHLKPNEILIPAYIDEEAVR
AIVDTKVVKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKSVEKTQGAIENLGKLLNIPTPVRIESFDNSNIMGTSPVSAM
VVFVNGKPSKKDYRKYKIKTVVGPDDYASMREVIKRRYSRVIRDGLTPPDLIVIDGGQGQVNVAKEVIQEQLGLDIPIAG
LQKNDKHQTHELLFGDPLQVVELSRNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFK
SLTKIKEASVDEIVEVGVPRAVAEAVQAKLNQTEPSRPLLEVAEPIVDID

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=376911 HBA50_RS05655 WP_045497602.1 1133718..1135550(-) (uvrC) [Streptococcus cristatus ATCC 51100]
ATGTCTACAAACAAGCTAATTCAATCCAAGCTGGAACTGTTGCCGACCAGTCCCGGCTGTTACATTCACAAGGACAAAAA
CGGGACTATTATCTATGTCGGAAAGGCCAAGAATCTCCGCAATCGTGTTCGCTCTTATTTTCGTGGCAGCCACGATACCA
AGACGGAGGCTCTGGTTTCCGAGATTGAGGATTTTGAGTTTATTGTCACCGAGTCCAACATTGAGGCTCTCCTCCTAGAA
ATCAATCTAATCAAGGAAAATAAGCCCAAGTACAATATCATGCTCAAGGACGATAAGTCCTATCCTTTTATTAAGATTAC
CAACGAGGTTTATCCGCGTCTGATTATCACTCGCCAAGTCAAAAAGGATGGTGGTCTTTATTTTGGGCCTTATCCAGATG
TCGGTGCAGCCAATGAAATCAAACGCCTGCTCGATCGCATTTTTACATTCAAAAAATGTACCAATCCACCTGCAAAAGTC
TGCTTTTATTATCACTTGGGGCAATGTGAAGCCCATACGATTTGCAAGCGGGATAGCCAGTATTTCAAGAATATGGCTCA
GGAAGTGTCGGATTTTCTCAAGGGACAGGACGATAAGATTATCGATGAGCTACGTGAGAAGATGAATAAAACAGCTGCAG
CCATGGAGTTTGAACGGGCGGCCGAATACCGTGACCTGATTCAAGCTATTGGAACCTTGCGTACTAAGCAGCGGGTCATG
GCTAAGGATTTGCAGAATCGTGATGTTTTTGGTTACTATGTGGATAAGGGCTGGATGTGTGTGCAGGTCTTCTTTGTGCG
CCAGGGCAAGTTGATTGAGCGTGATGTCAATCTTTTCCCCTATTACAATGATCCCGACGAAGATTTTCTGACCTATATTG
GCCAGTTTTACCAAGAAAAGTCCCACCTCAAGCCCAATGAAATCCTAATTCCAGCATATATTGACGAAGAAGCCGTCCGA
GCGATTGTGGATACTAAAGTAGTCAAGCCTCAGCGAGGCGAGAAGAAGCAGTTGGTCAATCTGGCTATTAAGAATGCTCG
GGTCAGCCTCCAGCAGAAATTTGATCTTTTGGAGAAATCCGTTGAGAAAACGCAGGGGGCTATAGAAAATCTAGGGAAGC
TCCTCAATATTCCGACACCCGTTCGGATTGAGTCTTTCGACAACTCAAATATCATGGGAACTAGTCCCGTATCGGCTATG
GTGGTCTTTGTCAATGGTAAGCCGAGCAAGAAGGATTACCGCAAATACAAGATCAAGACCGTGGTAGGGCCGGACGACTA
CGCCAGTATGCGAGAGGTTATCAAGCGCCGCTATAGTCGGGTCATTCGTGACGGGCTGACGCCACCAGATCTGATTGTCA
TTGATGGTGGGCAAGGCCAGGTCAATGTCGCTAAAGAAGTTATTCAGGAGCAGTTGGGATTGGATATTCCTATCGCTGGA
CTGCAAAAAAATGACAAGCACCAGACCCATGAATTGCTCTTTGGCGATCCTCTTCAAGTCGTAGAACTGTCCCGTAATTC
TCAGGAATTTTTCCTCCTCCAGCGCATCCAAGATGAGGTGCACCGCTTTGCCATTACCTTCCACCGCCAGCTTCGATCTA
AGAATTCCTTCTCATCGCAACTCGATGGCATCGAAGGTTTGGGGCCAAAACGTAAGCAAAATCTCATGAAACATTTCAAA
TCACTGACCAAGATTAAAGAAGCCAGTGTCGATGAAATCGTCGAAGTGGGCGTACCGCGAGCGGTGGCAGAAGCTGTGCA
GGCAAAACTCAATCAAACAGAGCCATCCCGACCTTTGTTAGAAGTGGCGGAGCCGATTGTAGATATAGATTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(198-230)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(374-525)

GIY-YIG catalytic domain (GIY-YIG)

(19-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

90.083

99.18

0.893
  uvrC Streptococcus pneumoniae R6

89.752

99.18

0.89
  uvrC Streptococcus pneumoniae D39

89.752

99.18

0.89