Detailed information NTG0376900

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FLM34_RS09670
• Genome accession: NZ_CP042314
• Coordinates: 1997563..1998363 (-)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain 90-17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1992563..2003363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FLM34_RS09650	dksA	1993143..1993598 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
FLM34_RS09655	sfsA	1993761..1994477 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
FLM34_RS09660	thpR	1994477..1995013 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
FLM34_RS09665	hrpB	1995086..1997515 (+)	2430	WP_032434212.1	ATP-dependent helicase HrpB	-
FLM34_RS09670	pilD	1997563..1998363 (-)	801	WP_004213441.1	A24 family peptidase	Machinery gene
FLM34_RS09675	-	1998360..1999106 (-)	747	WP_032434210.1	type II secretion system protein N	-
FLM34_RS09680	-	1999096..1999581 (-)	486	WP_004145896.1	type II secretion system protein M	-
FLM34_RS09685	gspL	1999574..2000767 (-)	1194	WP_032434208.1	type II secretion system protein GspL	-
FLM34_RS09690	gspK	2000754..2001740 (-)	987	WP_077254116.1	type II secretion system minor pseudopilin GspK	-
FLM34_RS09695	gspJ	2001737..2002333 (-)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
FLM34_RS09700	gspI	2002330..2002695 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
FLM34_RS09705	gspH	2002692..2003207 (-)	516	WP_032414529.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=376900 FLM34_RS09670 WP_004213441.1 1997563..1998363(-) (pilD) [Klebsiella pneumoniae strain 90-17]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=376900 FLM34_RS09670 WP_004213441.1 1997563..1998363(-) (pilD) [Klebsiella pneumoniae strain 90-17]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425