Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HBA50_RS03250 Genome accession   NZ_CP050133
Coordinates   651683..652279 (+) Length   198 a.a.
NCBI ID   WP_045496451.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 646683..657279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS10340 - 647153..647557 (+) 405 WP_235285277.1 LPXTG cell wall anchor domain-containing protein -
  HBA50_RS03240 (HBA50_03240) - 647833..649015 (-) 1183 Protein_642 IS110 family transposase -
  HBA50_RS03245 (HBA50_03245) pbp2b 649575..651632 (+) 2058 WP_005589560.1 penicillin-binding protein PBP2B -
  HBA50_RS03250 (HBA50_03250) recR 651683..652279 (+) 597 WP_045496451.1 recombination mediator RecR Machinery gene
  HBA50_RS03255 (HBA50_03255) - 652428..653474 (+) 1047 WP_045496454.1 D-alanine--D-alanine ligase -
  HBA50_RS03260 (HBA50_03260) murF 653579..654952 (+) 1374 WP_045496457.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  HBA50_RS03265 (HBA50_03265) - 654939..655550 (+) 612 WP_045496460.1 NUDIX hydrolase N-terminal domain-containing protein -
  HBA50_RS03270 (HBA50_03270) - 655742..656434 (+) 693 WP_045496463.1 TIGR02206 family membrane protein -
  HBA50_RS03275 (HBA50_03275) - 656543..657223 (+) 681 WP_045496465.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21624.75 Da        Isoelectric Point: 4.4687

>NTDB_id=376895 HBA50_RS03250 WP_045496451.1 651683..652279(+) (recR) [Streptococcus cristatus ATCC 51100]
MLYPTPIAKLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDDPCAICTDQTRDQT
VILIVEDSRDVSAMENIQEYHGLYHVLHGLISPMNGVGPDDINLKSLLTRLMDSQVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=376895 HBA50_RS03250 WP_045496451.1 651683..652279(+) (recR) [Streptococcus cristatus ATCC 51100]
ATGCTTTATCCAACTCCTATCGCTAAATTGATTGATAGCTTTTCCAAACTGCCGGGGATCGGCATCAAGACAGCTACTCG
TCTGGCCTTTTATACCATCGGGATGAGTGACGATGATGTCAATGAATTTGCCAAAAATCTACTAGCTGCCAAGCGTGAGC
TGACTTACTGCTCTATCTGTGGCAATCTGACGGACGATGATCCTTGTGCTATCTGTACGGATCAAACGCGCGATCAGACT
GTGATTCTGATCGTTGAGGATAGCCGCGATGTGTCTGCTATGGAAAATATCCAAGAATACCACGGCCTTTATCATGTTCT
CCACGGCCTCATCTCCCCCATGAACGGTGTAGGACCAGATGACATCAACCTCAAGAGTCTCTTGACTCGCTTGATGGACA
GCCAAGTGACGGAAGTGATTGTGGCTACTAATGCAACGGCTGACGGAGAAGCGACTTCTATGTATATTTCTCGAGTGCTC
AAGCCTGCAGGCATCAAGGTGACTCGTCTGGCCCGCGGATTGGCTGTCGGCGCTGATATCGAATACGCAGACGAAGTGAC
CCTGCTCCGAGCGATTGAAAATCGGACAGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

91.414

100

0.914
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49