Detailed information NTG0376876

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FLM38_RS10205
• Genome accession: NZ_CP042311
• Coordinates: 2087620..2088420 (-)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 101-17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2082620..2093420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FLM38_RS10185	dksA	2083200..2083655 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
FLM38_RS10190	sfsA	2083818..2084534 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
FLM38_RS10195	thpR	2084534..2085070 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
FLM38_RS10200	hrpB	2085143..2087572 (+)	2430	WP_179374217.1	ATP-dependent helicase HrpB	-
FLM38_RS10205	pilD	2087620..2088420 (-)	801	WP_002888947.1	A24 family peptidase	Machinery gene
FLM38_RS10210	-	2088417..2089163 (-)	747	WP_179374218.1	type II secretion system protein N	-
FLM38_RS10215	-	2089153..2089638 (-)	486	WP_004151943.1	type II secretion system protein M	-
FLM38_RS10220	gspL	2089631..2090824 (-)	1194	WP_004151942.1	type II secretion system protein GspL	-
FLM38_RS10225	gspK	2090811..2091797 (-)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
FLM38_RS10230	gspJ	2091794..2092390 (-)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
FLM38_RS10235	gspI	2092387..2092752 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
FLM38_RS10240	gspH	2092749..2093264 (-)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=376876 FLM38_RS10205 WP_002888947.1 2087620..2088420(-) (pilD) [Klebsiella pneumoniae strain 101-17]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=376876 FLM38_RS10205 WP_002888947.1 2087620..2088420(-) (pilD) [Klebsiella pneumoniae strain 101-17]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425