Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   HBA50_RS00620 Genome accession   NZ_CP050133
Coordinates   122546..125095 (+) Length   849 a.a.
NCBI ID   WP_045500174.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 117546..130095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS00595 (HBA50_00595) - 118796..119314 (+) 519 WP_045500162.1 hypothetical protein -
  HBA50_RS00600 (HBA50_00600) nrdI 119392..119853 (+) 462 WP_152621717.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  HBA50_RS00605 (HBA50_00605) - 119900..120166 (-) 267 WP_045500165.1 hypothetical protein -
  HBA50_RS00610 (HBA50_00610) argS 120218..121906 (-) 1689 WP_045500168.1 arginine--tRNA ligase -
  HBA50_RS00615 (HBA50_00615) argR 122032..122472 (+) 441 WP_045500171.1 arginine repressor -
  HBA50_RS00620 (HBA50_00620) hexA 122546..125095 (+) 2550 WP_045500174.1 DNA mismatch repair protein MutS Machinery gene
  HBA50_RS00630 (HBA50_00630) - 125287..125757 (-) 471 WP_045500176.1 DUF3021 family protein -
  HBA50_RS00635 (HBA50_00635) brsR 125754..126194 (-) 441 WP_045500179.1 LytTR family DNA-binding domain-containing protein Regulator
  HBA50_RS00640 (HBA50_00640) hexB 126379..128322 (+) 1944 WP_045500183.1 DNA mismatch repair endonuclease MutL Machinery gene
  HBA50_RS00645 (HBA50_00645) - 128358..128879 (-) 522 WP_045500186.1 RDD family protein -
  HBA50_RS00650 (HBA50_00650) - 128863..129369 (-) 507 WP_045500189.1 helix-turn-helix domain-containing protein -

Sequence


Protein


Download         Length: 849 a.a.        Molecular weight: 94895.22 Da        Isoelectric Point: 4.8975

>NTDB_id=376854 HBA50_RS00620 WP_045500174.1 122546..125095(+) (hexA) [Streptococcus cristatus ATCC 51100]
MAVEKLSPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAGVPYHSAQQYIDVLV
ESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGTVVDSSKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLEDFAL
VCGEIRNLKAREVVLGYALPEAEEQVLAGQMNLLLSYVQTALDDVQLLGEELSPMERQAAGKLLEYVHRTQMRELSHLKK
AQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDETKTAMGSRMLRSWIQRPLIDEARISQRQNVVEVFLDHFF
ERSDLTESLKGVYDIERLASRVSFGKTNPKDLLQLAATLGNVPQIKAILQGIDSPHLARLIEGLDPIPELAGLISSAISP
DAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANSGISNLKIDYNKKDGYYFHVTNSQLAHVPSHFFRKA
TLKNSERFGTEELARIEGEMLEAREKSANLEYEIFMRIREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQQHLVRPVFT
AERRLQIEKGRHPVVEKVMGAQSYIPNSILLDQETDIQLITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPVFDA
IFTRIGAADDLVSGQSTFMVEMMEANRAIRQASDRSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYHEL
TALEDSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERADSILSHLESQNKGLDSELPDGSL
QKQPQVAEQMSLFAEGSENPVLTELRDLDIYNMTPLEVMAAVAELKKKL

Nucleotide


Download         Length: 2550 bp        

>NTDB_id=376854 HBA50_RS00620 WP_045500174.1 122546..125095(+) (hexA) [Streptococcus cristatus ATCC 51100]
ATGGCAGTAGAAAAGTTATCGCCAGGCATGCAGCAGTATTTGGATATCAAAAAGGACTATCCAGATGCTTTCTTGCTCTT
TCGGATGGGGGATTTCTATGAGTTGTTTTATGATGATGCGGTCAATGCCGCCCAGATTTTAGAGATTTCTCTCACCAGCC
GCAATAAAAATGCAGAAAATCCCATTCCCATGGCTGGAGTTCCCTATCATTCGGCACAGCAATATATTGATGTTTTGGTC
GAATCAGGCTATAAGGTAGCGATTGCGGAGCAGATGGAAGATCCCAAGGAAGCCAAGGGAGTTGTTAAGCGGGAGGTCGT
TCAGGTTATCACGCCGGGAACGGTGGTGGACTCCAGTAAGCCGGACTCTGCTAATAACTTTCTGGTGGCTCTGGATTACT
CAGACGGCCTCTATGGTCTGGCTTATATGGACTTGGTGACTGGTGAGTTTCAGGTGACCAGTTTGGAGGACTTTGCCCTG
GTCTGCGGGGAAATTCGCAATTTGAAAGCTAGGGAAGTTGTGTTGGGCTATGCCTTGCCAGAAGCTGAGGAGCAGGTCTT
GGCTGGACAGATGAACCTCTTACTGTCCTATGTACAGACGGCCTTGGACGATGTCCAGCTGCTGGGCGAGGAGCTGTCTC
CTATGGAGCGTCAGGCAGCAGGGAAATTGCTGGAGTATGTGCACCGGACCCAGATGAGGGAACTCAGCCATTTGAAGAAG
GCCCAGCATTATGAAATTAAGGACTTTCTGCAAATGGATTATGCCACTAAGGCGAGTCTGGATTTGACAGAAAATGCTCG
TTCAGGCAAGAAGCACGGCAGTCTTTATTGGCTGATGGACGAGACCAAGACGGCCATGGGCAGTCGCATGCTGCGCTCTT
GGATCCAGCGTCCGCTGATTGATGAAGCGCGAATTAGCCAGCGGCAGAATGTCGTCGAGGTTTTTCTGGATCATTTCTTT
GAGCGGAGTGATTTGACGGAGAGCCTCAAGGGAGTCTATGATATCGAGCGGCTGGCTAGTCGAGTTTCTTTTGGTAAGAC
CAATCCCAAGGATCTGCTGCAGCTGGCAGCTACATTGGGCAACGTGCCTCAGATTAAGGCTATTCTGCAAGGGATCGACA
GTCCGCATCTAGCTCGTTTGATTGAGGGCTTGGATCCTATTCCAGAGTTGGCGGGCTTGATTAGCTCGGCCATTTCGCCA
GATGCACCTCATATCATCACCGAGGGCAATATCATTCGGACAGGTTTTGATGAGACCTTGGATCAATATCGGCTTGTGCT
GAGGGAGGGGACCGGGTGGATTGCGGAGCTGGAAGTCAAAGAACGTGCCAACAGCGGCATCAGCAATCTGAAGATTGATT
ACAATAAAAAAGATGGTTACTATTTCCACGTGACCAATTCCCAGCTGGCTCATGTGCCTAGCCATTTCTTCCGCAAGGCG
ACCCTGAAAAATTCGGAGCGTTTCGGAACGGAGGAGCTGGCACGAATTGAGGGAGAGATGTTGGAGGCGCGTGAAAAATC
TGCTAATCTGGAATACGAAATTTTCATGCGGATTCGCGAGGAAGCTGGCAAATACATCCAGCGCTTGCAGGCCTTGGCAC
AAACGCTGGCAGCTGTGGATGTCCTGCAGAGTTTTGCTGCGGTGGCAGAACAGCAGCATTTGGTGCGTCCCGTCTTTACT
GCGGAGCGCCGTCTGCAGATTGAAAAAGGCCGCCATCCTGTTGTGGAAAAGGTGATGGGTGCCCAAAGCTACATTCCAAA
TAGTATTCTGCTGGACCAGGAAACGGACATCCAGCTGATTACTGGGCCTAATATGAGTGGGAAATCGACCTATATGCGCC
AGCTGGCTATCATCGTTATTATGGCGCAGATGGGCTCTTATGTGCCCGCCCAGTCTGCCAGTCTGCCAGTATTTGACGCG
ATTTTCACTCGCATCGGTGCAGCGGATGATCTGGTGTCTGGCCAGTCCACCTTTATGGTGGAGATGATGGAGGCCAATCG
GGCCATTCGACAGGCCAGCGATCGTTCGCTCATTCTCTTTGATGAGCTGGGGCGTGGAACGGCGACTTATGATGGGATGG
CGCTGGCTCAAGCCATTATCGAGCATATTCATCATTATACTGGGGCCAAAACCCTCTTTGCCACCCACTATCACGAGCTG
ACAGCCTTGGAGGATAGTCTGGAGCATTTGGAAAATGTCCATGTGGCAACCTTGGAAAAGGACGGGCAGGTGACTTTCCT
GCATAAGATTGAGCCGGGTCCGGCTGACAAGTCCTACGGAATCCATGTAGCGAAGATTGCCGGACTTCCTGAGAAATTAC
TGGAGCGGGCGGATAGCATTTTGAGCCATTTGGAGAGTCAGAATAAAGGACTTGACTCAGAGCTTCCTGATGGAAGCCTA
CAAAAGCAGCCGCAAGTGGCGGAGCAGATGTCTCTTTTTGCAGAAGGATCGGAAAATCCAGTCCTGACTGAACTACGAGA
CTTGGACATCTACAATATGACTCCCCTGGAAGTCATGGCGGCGGTAGCCGAGCTCAAGAAGAAGTTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

77.385

100

0.774

  mutS Pseudomonas stutzeri strain ATCC 17587

38.856

100

0.392