Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HBA50_RS00130 Genome accession   NZ_CP050133
Coordinates   21229..22344 (+) Length   371 a.a.
NCBI ID   WP_045499929.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 16229..27344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS00105 (HBA50_00105) pgsA 16680..17219 (-) 540 WP_005592114.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HBA50_RS00110 (HBA50_00110) rodZ 17230..18045 (-) 816 WP_045499921.1 cytoskeleton protein RodZ -
  HBA50_RS00115 (HBA50_00115) - 18104..19399 (-) 1296 WP_045499922.1 pitrilysin family protein -
  HBA50_RS00120 (HBA50_00120) - 19399..20646 (-) 1248 WP_045499924.1 pitrilysin family protein -
  HBA50_RS00125 (HBA50_00125) yaaA 20836..21225 (+) 390 WP_045499926.1 S4 domain-containing protein YaaA -
  HBA50_RS00130 (HBA50_00130) recF 21229..22344 (+) 1116 WP_045499929.1 DNA replication/repair protein RecF Machinery gene
  HBA50_RS00135 (HBA50_00135) guaB 22428..23909 (-) 1482 WP_005591397.1 IMP dehydrogenase -
  HBA50_RS00140 (HBA50_00140) trpS 24075..25100 (-) 1026 WP_045499932.1 tryptophan--tRNA ligase -
  HBA50_RS00145 (HBA50_00145) - 25339..26961 (+) 1623 WP_045499935.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 42337.58 Da        Isoelectric Point: 6.7282

>NTDB_id=376853 HBA50_RS00130 WP_045499929.1 21229..22344(+) (recF) [Streptococcus cristatus ATCC 51100]
MWLKKLKIKHFRNYQSAEVDFDPGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRTDKDLIHFQENNLQISGIIEKTTGK
IPLDIELTPKGRITKINHLKQGKLSDYIGVVNVVLFAPEDLQLIKGAPALRRKFIDIELGQIKPIYLADLSSYNHVLKQR
NAYLKANDKVDETFLSVLDEQLIDFGCRVMQHRLDFIEKLEGFAQESHSDISQGKEKLTIKYLSSVPFSCLEDLEASFRA
ALSESRRRDLFKKNTGVGPHRDDINFFINDMDAGFGSQGQHRSVVLSLKLAEIKLIESLTKDTPILLLDDVMSELDNMRQ
LKLLETISQNIQTFITTTSLDHLHNLPDDINIFQISQGVIKKEENIGFTNE

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=376853 HBA50_RS00130 WP_045499929.1 21229..22344(+) (recF) [Streptococcus cristatus ATCC 51100]
ATGTGGTTAAAAAAGCTGAAAATTAAACATTTTCGTAATTACCAATCTGCAGAGGTTGATTTTGATCCTGGCCTTAATAT
CTTTCTAGGACAAAATGCACAGGGGAAAACCAATATTCTAGAAGCCATCTATTTTTTAGCCCTTACTCGCAGTCACCGGA
CCCGAACCGATAAGGACTTGATTCATTTCCAAGAGAATAATCTTCAAATTTCGGGAATTATTGAAAAAACAACGGGTAAA
ATCCCACTTGACATCGAGTTGACACCAAAGGGGAGAATCACCAAAATAAATCATTTGAAACAAGGGAAATTATCAGATTA
TATAGGGGTTGTCAACGTTGTCTTGTTTGCTCCAGAAGATTTACAGCTCATTAAAGGAGCCCCTGCTTTACGCCGAAAAT
TTATTGATATTGAGCTTGGGCAAATCAAGCCCATCTACCTTGCTGACTTATCTAGTTACAATCATGTGCTCAAGCAAAGA
AATGCCTACCTTAAGGCTAATGATAAGGTAGATGAAACCTTTCTCTCTGTTCTAGATGAGCAACTGATTGATTTTGGTTG
TCGTGTCATGCAACATCGCTTAGACTTTATTGAAAAGCTAGAAGGTTTTGCTCAGGAAAGCCATAGCGATATTTCTCAAG
GAAAAGAGAAGTTGACAATCAAGTACTTATCCTCTGTTCCGTTTTCATGCCTTGAAGACTTGGAAGCTTCTTTTCGAGCA
GCCTTATCAGAAAGTCGTAGACGCGATCTTTTCAAAAAAAATACAGGTGTTGGTCCTCACCGAGATGATATCAACTTTTT
TATCAATGATATGGATGCCGGATTTGGTAGCCAAGGCCAACACCGTAGTGTTGTTCTATCTCTCAAGTTAGCTGAAATTA
AACTAATCGAAAGCCTTACAAAAGATACTCCAATATTATTGCTTGACGATGTAATGAGCGAACTTGACAATATGCGTCAA
TTAAAATTGCTAGAAACTATCTCTCAAAACATTCAGACTTTCATCACGACAACCAGCTTAGATCACTTACATAATCTACC
AGATGATATTAATATTTTTCAGATAAGTCAAGGCGTAATTAAGAAAGAAGAAAATATAGGTTTTACAAATGAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

71.229

96.496

0.687
  recF Bacillus subtilis subsp. subtilis str. 168

44.595

99.73

0.445