Detailed information NTG0376798

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: HAV23_RS12750
• Genome accession: NZ_CP050116
• Coordinates: 2553030..2554241 (+)
• Length: 403 a.a.
• NCBI ID: WP_010888606.1
• Uniprot ID: Q9RSZ6
• Organism: Deinococcus radiodurans strain BNK-50
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2548030..2559241

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HAV23_RS12720 (HAV23_12725)	-	2548329..2549123 (+)	795	WP_010888600.1	enoyl-ACP reductase	-
HAV23_RS12725 (HAV23_12730)	-	2549332..2549970 (-)	639	WP_027479823.1	nitroreductase family protein	-
HAV23_RS12730 (HAV23_12735)	-	2550060..2550410 (+)	351	WP_027479824.1	helix-turn-helix domain-containing protein	-
HAV23_RS12735 (HAV23_12740)	-	2550481..2550966 (-)	486	WP_010888603.1	GreA/GreB family elongation factor	-
HAV23_RS12740 (HAV23_12745)	-	2551162..2552346 (+)	1185	WP_051618904.1	MFS transporter	-
HAV23_RS12745 (HAV23_12750)	clpP	2552419..2553033 (+)	615	WP_010888605.1	ATP-dependent Clp protease proteolytic subunit	Regulator
HAV23_RS12750 (HAV23_12755)	clpX	2553030..2554241 (+)	1212	WP_010888606.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
HAV23_RS12755 (HAV23_12760)	lon	2554388..2556829 (+)	2442	WP_027479826.1	endopeptidase La	-
HAV23_RS12760 (HAV23_12765)	-	2556882..2557766 (-)	885	WP_010888608.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 403 a.a.
• Molecular weight: 44283.48 Da
• Isoelectric Point: 4.7712

>NTDB_id=376798 HAV23_RS12750 WP_010888606.1 2553030..2554241(+) (clpX) [Deinococcus radiodurans strain BNK-50]
MTRATADRCSFCGRQHPQIAQLIEAPGRAAFICNECAERAFDLVKQQRKEAGSEFSLDELPSAKEIKAYLDEFVIGQDEA
KKALAVAVVSHYHRLSNPDAGLQKSNILLIGPTGTGKTLLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQA
AEYDVAAAERGIIYVDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQVDTRNILFIVG
GAFESMSEIARARTNVRAVGFGAEHKGEEKEEVRFLPEDLVKFGLIPEFVGRLPLVVQLQDLDEDALIRILTEPQGAIIK
QYQALFGFQGVDLTFSEEALQEVAHRAKERKTGARGLRAVLEKSMTDLLFELPRDDVKEIRFEAEYIDDPLKALESKGLK
KSA

Nucleotide

• Length: 1212 bp

>NTDB_id=376798 HAV23_RS12750 WP_010888606.1 2553030..2554241(+) (clpX) [Deinococcus radiodurans strain BNK-50]
ATGACCCGCGCCACCGCCGACCGCTGCTCGTTTTGCGGACGCCAGCACCCGCAGATCGCCCAGCTCATCGAAGCGCCGGG
CCGCGCCGCCTTTATCTGCAACGAGTGCGCCGAGCGCGCCTTTGACCTCGTCAAGCAGCAGCGCAAGGAAGCGGGCAGCG
AGTTCAGCCTCGACGAACTGCCGAGCGCCAAGGAAATCAAGGCGTACCTCGACGAGTTCGTGATTGGACAGGACGAAGCG
AAGAAAGCGCTCGCCGTCGCCGTGGTCAGCCACTACCACCGCCTCTCGAACCCTGACGCCGGACTGCAAAAGAGCAACAT
CCTCTTGATCGGGCCGACCGGCACCGGCAAGACGCTGCTCGCCCAGAGCCTCGCGGAAATGCTCGAAGTGCCCTTCGCCA
TCGCCGACGCCACCACGCTGACCGAAGCCGGGTATGTGGGCGACGACGTGGAGAACGTGATTGTCCGCCTGCTGCAAGCC
GCCGAGTACGACGTGGCCGCCGCCGAGCGCGGAATCATCTACGTGGACGAAATCGACAAGATCGCCCGCAAGTCCGAAGG
CACCTCGATCACCCGCGACGTGAGCGGCGAAGGCGTGCAGCAAGCGCTCCTCAAGATCATCGAAGGGACCGTGGCGCAAG
TTCCCCCGCAGGGGGGTCGCAAGCACCCACAGCAGGAACTCGTGCAGGTGGACACCCGCAACATCCTGTTCATCGTGGGC
GGCGCCTTCGAGAGCATGAGCGAAATCGCCCGCGCCCGCACCAACGTCCGCGCCGTGGGCTTCGGCGCCGAGCACAAGGG
CGAGGAAAAGGAAGAAGTGCGCTTCCTTCCCGAAGACCTCGTGAAGTTCGGGTTGATTCCCGAGTTCGTGGGCCGTCTGC
CGCTCGTGGTGCAGCTCCAAGACCTCGACGAGGACGCCCTGATCCGCATCCTGACCGAACCGCAGGGCGCCATCATCAAG
CAGTACCAAGCGCTGTTCGGCTTTCAGGGTGTGGACCTGACCTTCAGCGAAGAAGCGCTGCAAGAAGTCGCCCACCGCGC
CAAGGAGCGCAAGACCGGGGCGCGTGGCCTGCGCGCCGTCCTCGAAAAATCGATGACCGATCTGCTGTTCGAACTACCCC
GCGACGACGTGAAGGAAATTCGTTTCGAGGCGGAGTATATTGACGACCCACTGAAGGCACTTGAGTCTAAGGGACTCAAA
AAGTCTGCATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (302-373)

• ClpX C4-type zinc finger (zf-C4_ClpX) (8-46)

• AAA domain (Cdc48 subfamily) (AAA_2) (103-295)

3D structure

• AlphaFold DB: Q9RSZ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	57.623	96.03	0.553
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.367	99.504	0.531