Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HAV23_RS12470 Genome accession   NZ_CP050116
Coordinates   2497620..2499965 (+) Length   781 a.a.
NCBI ID   WP_027479810.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BNK-50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2492620..2504965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV23_RS12455 (HAV23_12460) gyrA 2493155..2495593 (+) 2439 WP_010888548.1 DNA gyrase subunit A -
  HAV23_RS12460 (HAV23_12465) - 2495888..2496289 (+) 402 WP_027479809.1 hypothetical protein -
  HAV23_RS12465 (HAV23_12470) - 2496548..2497546 (+) 999 WP_166479975.1 alpha/beta hydrolase -
  HAV23_RS12470 (HAV23_12475) recG 2497620..2499965 (+) 2346 WP_027479810.1 ATP-dependent DNA helicase RecG Machinery gene
  HAV23_RS12475 (HAV23_12480) - 2500017..2500817 (+) 801 WP_027479811.1 GNAT family N-acetyltransferase -
  HAV23_RS12480 (HAV23_12485) - 2500940..2501365 (+) 426 WP_010888553.1 GNAT family N-acetyltransferase -
  HAV23_RS12485 (HAV23_12490) - 2501313..2501885 (+) 573 WP_010888554.1 kinase -
  HAV23_RS12490 (HAV23_12495) - 2501866..2502189 (-) 324 WP_034350059.1 hypothetical protein -
  HAV23_RS12495 (HAV23_12500) - 2502326..2503507 (+) 1182 WP_027479813.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 86290.03 Da        Isoelectric Point: 7.8879

>NTDB_id=376795 HAV23_RS12470 WP_027479810.1 2497620..2499965(+) (recG) [Deinococcus radiodurans strain BNK-50]
MATVAELQERLRRPLAAELAGGCHDRVVAGGVEKLLSTPLAGPFPKVREVLSGYAGLDESARAVALREALTLLGSTGKTT
RRAAAPAPTKMAPPQAAPGERLPLDAPAERLNTGPGGARKLSTLGLHTLRDVLHAYPHRHEDRRALPDLADVEEGQKVTV
MGTVVSKFRRAPRPGMLILEIVLETPSGGRVKATWFNQPWVEKQLREGARLVLTGRAKKFGRQTQLSVEHMETVDKAEGS
LSTRRIVGVYDAKEGISQEFLRKAAYKALEAAPLDDYLPAHWRRKYGLTDLGDALWGIHFPRDEAQLARAHGRLRFDEYL
FLELRMLLQGEDAVLQGKRFEARGEDINKFEAALPFRFTNAQRRVLLEITDDMRSDQQMARLVQGDVGSGKTAVAACALY
LAVRDGYQGALMAPTEILARQHYANLCGYLGQLDVRVGLLIGAMTPKAKLEMQTRIAEGDVDVVVGTQALIQENVQFDNL
GLAVVDEEHRFGVQQRRRLLASRPDVLVMSATPIPRSLALTAYGDLELSIIDELPPGRTPIETKLIQDTARQQAYGFVMG
QIRQGRQAYVVTALIEENENLELLAATQLADDLKTILPEARIDLLHGKMSAAEKDYVMERFRAHEFDILVSTTVIEVGVD
VPNSTVMVIENAERFGLAQLHQLRGRVGRGSLQSYCVMIAGETSLKTRKRLKIIEGSTDGFVIAEADLKLRGPGEIRGTR
QSGIPDLRLADLANDADIIEQARELAKHILANDPRLEHPRLQYLRSELQNRSSSVAYREVI

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=376795 HAV23_RS12470 WP_027479810.1 2497620..2499965(+) (recG) [Deinococcus radiodurans strain BNK-50]
ATGGCGACGGTGGCTGAACTGCAAGAACGACTTCGGCGCCCCCTCGCTGCCGAGCTGGCGGGGGGTTGCCATGACCGCGT
GGTGGCGGGCGGCGTGGAGAAATTACTTTCCACACCGCTCGCCGGTCCTTTTCCCAAAGTGCGCGAGGTGCTGAGCGGCT
ACGCGGGGCTCGACGAAAGCGCCCGCGCCGTCGCGCTGCGTGAGGCGCTGACATTGCTGGGGAGCACCGGCAAAACGACC
CGCCGCGCCGCCGCGCCCGCACCCACCAAAATGGCTCCGCCGCAGGCCGCCCCCGGTGAGCGCCTGCCGCTGGACGCCCC
CGCCGAGCGCCTGAACACCGGCCCCGGCGGCGCGCGCAAGCTCAGCACGCTGGGCCTGCACACCCTGCGCGACGTACTGC
ACGCCTACCCGCACCGCCACGAGGACCGCCGCGCCCTGCCCGACCTGGCGGACGTGGAGGAAGGCCAGAAGGTGACCGTG
ATGGGCACGGTGGTCAGCAAGTTTCGCCGTGCGCCCCGGCCAGGAATGCTGATTCTGGAAATCGTGCTGGAAACGCCTTC
TGGTGGGCGGGTCAAGGCGACGTGGTTCAACCAACCCTGGGTCGAGAAGCAGCTGCGCGAGGGCGCACGACTGGTGCTGA
CGGGCCGTGCCAAGAAGTTCGGGCGGCAGACGCAGCTCAGCGTGGAGCACATGGAAACGGTGGACAAGGCCGAGGGCAGC
CTCAGCACCAGGCGCATCGTCGGCGTGTATGACGCCAAGGAGGGCATCAGCCAGGAGTTTTTGCGCAAGGCGGCGTACAA
GGCATTGGAAGCCGCGCCCCTCGACGACTATCTGCCGGCCCACTGGCGGCGCAAATACGGCCTGACCGACCTCGGCGACG
CGCTGTGGGGCATTCACTTTCCGCGCGACGAGGCGCAGCTCGCGCGGGCACACGGACGGCTGCGCTTCGACGAGTACCTG
TTTCTGGAACTGCGGATGCTGCTGCAAGGTGAGGACGCCGTGCTGCAAGGCAAGCGCTTCGAGGCGCGCGGCGAGGACAT
CAACAAGTTCGAGGCGGCACTCCCCTTCCGTTTTACCAATGCCCAGCGCCGGGTGCTGCTGGAAATCACCGACGACATGC
GCTCGGACCAGCAGATGGCGCGGCTGGTGCAGGGCGACGTGGGGAGCGGCAAAACCGCCGTCGCCGCCTGCGCGCTCTAC
CTCGCCGTGCGCGACGGCTACCAGGGCGCGCTGATGGCCCCCACCGAGATTCTGGCCCGCCAGCACTACGCCAACCTCTG
CGGGTACCTCGGCCAGCTCGACGTGCGGGTGGGCCTGCTGATCGGCGCGATGACCCCAAAAGCCAAGCTGGAGATGCAGA
CCCGCATTGCCGAGGGCGACGTGGACGTGGTGGTGGGCACCCAGGCGCTGATTCAGGAGAACGTGCAGTTCGACAATCTG
GGCCTCGCCGTGGTGGACGAGGAACACCGCTTTGGCGTGCAGCAACGCCGCCGCCTGCTCGCCAGTCGCCCCGACGTGCT
GGTGATGTCGGCCACGCCCATTCCGCGCTCGCTGGCGCTAACGGCTTACGGCGACCTTGAACTGAGCATCATCGACGAGT
TGCCGCCGGGCCGCACCCCGATTGAAACCAAGCTGATTCAGGACACCGCCCGCCAGCAGGCCTACGGCTTCGTGATGGGC
CAGATTCGCCAGGGCCGGCAGGCGTACGTGGTCACCGCGCTGATTGAGGAAAACGAGAATCTGGAGCTGCTCGCGGCCAC
CCAACTCGCCGACGACCTCAAGACCATCCTTCCCGAAGCGCGCATCGACCTGCTACACGGCAAGATGTCCGCTGCCGAGA
AGGATTACGTGATGGAGCGTTTCCGGGCGCACGAGTTCGACATTCTGGTGTCCACCACCGTGATCGAGGTCGGCGTGGAC
GTGCCCAATTCCACCGTGATGGTGATTGAAAACGCCGAGCGTTTCGGCCTCGCGCAGCTTCACCAGTTGCGCGGGCGGGT
CGGGCGCGGCAGCCTCCAGAGCTACTGCGTGATGATTGCCGGGGAAACGTCCCTGAAGACCCGCAAGCGCCTGAAAATCA
TCGAGGGCAGCACCGACGGCTTTGTCATTGCCGAGGCCGACCTCAAGCTGCGCGGCCCCGGCGAGATTCGCGGCACCCGG
CAAAGCGGGATTCCCGACCTGCGGCTGGCCGACCTTGCCAACGACGCCGACATCATCGAGCAGGCGCGCGAACTCGCCAA
GCACATCCTGGCGAATGACCCCCGGCTGGAGCATCCGCGCTTGCAGTATTTGCGCAGCGAGTTGCAGAACAGAAGTTCGA
GCGTGGCGTACCGCGAAGTGATTTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(564-670)

DEAD/DEAH box helicase (DEAD)

(379-514)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(698-770)

RecG wedge domain (RecG_wedge)

(114-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

43.683

84.123

0.367

Multiple sequence alignment