Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AOLE_RS02045 Genome accession   NC_014259
Coordinates   436733..437362 (-) Length   209 a.a.
NCBI ID   WP_013196771.1    Uniprot ID   A0AAN0P5Q2
Organism   Acinetobacter oleivorans DR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431733..442362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOLE_RS02010 (AOLE_01975) mlaE 432060..432839 (+) 780 WP_005301186.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  AOLE_RS02015 (AOLE_01980) - 432839..433522 (+) 684 WP_005301188.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AOLE_RS02020 (AOLE_01985) - 433549..434190 (+) 642 WP_013196769.1 phospholipid-binding protein MlaC -
  AOLE_RS02025 (AOLE_01990) - 434201..434488 (+) 288 WP_004789663.1 lipid asymmetry maintenance protein MlaB -
  AOLE_RS02030 (AOLE_01995) - 434561..435574 (-) 1014 WP_004789661.1 CorA family divalent cation transporter -
  AOLE_RS02035 (AOLE_02000) - 435733..436314 (+) 582 WP_005301199.1 TIGR00730 family Rossman fold protein -
  AOLE_RS02040 (AOLE_02005) - 436329..436727 (+) 399 WP_013196770.1 NUDIX domain-containing protein -
  AOLE_RS02045 (AOLE_02010) comF 436733..437362 (-) 630 WP_013196771.1 ComF family protein Machinery gene
  AOLE_RS02050 (AOLE_02015) recG 437355..439400 (-) 2046 WP_013196772.1 ATP-dependent DNA helicase RecG -
  AOLE_RS02055 (AOLE_02020) - 439421..440236 (+) 816 WP_013196773.1 NAD(P)H-binding protein -
  AOLE_RS02060 (AOLE_02025) - 440310..441299 (+) 990 WP_013196774.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24175.29 Da        Isoelectric Point: 9.0180

>NTDB_id=37676 AOLE_RS02045 WP_013196771.1 436733..437362(-) (comF) [Acinetobacter oleivorans DR1]
MFSFLNPQHLIQLLSPCLLCESDVREKHSLCKDCWKQLPWLKQTIQRNDQSVLVACDYAYPVSRIIQQFKYEQKLHYEIL
LGEILQQLKFPKVQAIVPMPISNQRLIERGFNQSLLIANILSKQLKIPVWQPVQRLAEHSQKGLSRLERFENIEQQFIAL
SEEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYAACLAATLTS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=37676 AOLE_RS02045 WP_013196771.1 436733..437362(-) (comF) [Acinetobacter oleivorans DR1]
ATGTTTAGTTTCTTAAACCCACAGCATCTTATTCAATTACTCTCACCTTGCTTATTATGTGAGTCAGATGTACGTGAAAA
ACATTCGCTCTGTAAGGACTGTTGGAAGCAGTTACCTTGGCTTAAACAAACAATTCAACGCAATGATCAATCAGTTCTTG
TGGCCTGTGATTATGCTTATCCAGTTAGCCGGATCATTCAGCAGTTTAAATATGAACAGAAATTACATTATGAAATTTTG
TTAGGTGAAATTTTACAACAACTCAAATTTCCCAAGGTACAGGCTATTGTGCCTATGCCTATTTCTAATCAACGTTTAAT
CGAACGTGGTTTTAATCAGTCATTGTTAATTGCAAACATCTTAAGCAAACAATTAAAAATACCTGTTTGGCAGCCAGTAC
AACGTCTTGCTGAACATTCGCAAAAAGGGCTTTCTCGACTTGAACGCTTTGAGAACATTGAGCAACAATTTATTGCGCTT
TCTGAAGAAAAACGGCGTTATCGCCGTGTTCTTATTATTGATGATGTAATAACCACTGGAAGCTCTATTCATGCGCTCAG
TCAAGCACTTAAACAATTAGGCTGCACATCTATCTATGCCGCTTGTTTAGCGGCAACTCTGACCAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

85.646

100

0.856
  comF Acinetobacter baumannii D1279779

84.689

100

0.847

Multiple sequence alignment