Detailed information    

insolico Bioinformatically predicted

Overview


Name   ssb   Type   Machinery gene
Locus tag   FPV14_RS10910 Genome accession   NZ_CP042286
Coordinates   2272066..2272461 (-) Length   131 a.a.
NCBI ID   WP_000932697.1    Uniprot ID   A0A7U7PX14
Organism   Staphylococcus argenteus strain B3-25B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context


Location: 2267066..2277461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV14_RS10885 (FPV14_10885) thiE 2267671..2268312 (-) 642 WP_047557451.1 thiamine phosphate synthase -
  FPV14_RS10890 (FPV14_10890) thiM 2268314..2269105 (-) 792 WP_047557453.1 hydroxyethylthiazole kinase -
  FPV14_RS10895 (FPV14_10895) thiD 2269089..2269919 (-) 831 WP_001039676.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FPV14_RS10900 (FPV14_10900) tenA 2269916..2270602 (-) 687 WP_000397288.1 thiaminase II -
  FPV14_RS10905 (FPV14_10905) - 2270982..2271674 (-) 693 WP_146501810.1 transglycosylase family protein -
  FPV14_RS10910 (FPV14_10910) ssb 2272066..2272461 (-) 396 WP_000932697.1 single-stranded DNA-binding protein Machinery gene
  FPV14_RS10915 (FPV14_10915) - 2272655..2273095 (+) 441 WP_000846749.1 YwpF-like family protein -
  FPV14_RS10920 (FPV14_10920) fabZ 2273152..2273592 (-) 441 WP_047557456.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FPV14_RS10925 (FPV14_10925) murA 2273626..2274891 (-) 1266 WP_000358013.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FPV14_RS10930 (FPV14_10930) - 2275003..2275236 (-) 234 WP_000384521.1 DUF1146 family protein -
  FPV14_RS10935 (FPV14_10935) - 2275568..2275972 (-) 405 WP_001094393.1 F0F1 ATP synthase subunit epsilon -
  FPV14_RS10940 (FPV14_10940) atpD 2275992..2277404 (-) 1413 WP_000511140.1 F0F1 ATP synthase subunit beta -

Sequence


Protein


Download         Length: 131 a.a.        Molecular weight: 15016.10 Da        Isoelectric Point: 5.2398

>NTDB_id=376641 FPV14_RS10910 WP_000932697.1 2272066..2272461(-) (ssb) [Staphylococcus argenteus strain B3-25B]
MLNKIVIVGRLTKDVQIFEKEERKVATFCVATQRNYKDENGEIVCDYIFCKAFGKLASNIDKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSHNIDNPDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=376641 FPV14_RS10910 WP_000932697.1 2272066..2272461(-) (ssb) [Staphylococcus argenteus strain B3-25B]
ATGCTAAACAAAATCGTAATAGTTGGAAGACTAACGAAAGATGTACAAATCTTTGAAAAGGAGGAAAGAAAGGTTGCTAC
GTTTTGTGTTGCAACACAACGAAATTATAAAGATGAAAACGGAGAAATCGTTTGTGATTATATTTTTTGCAAAGCATTTG
GCAAGCTAGCGTCAAACATTGATAAGTACACCAATCAAGGTACGCTAGTTGGTATTACAGGTCAAATGAGATCAAGAAAA
TATGATAAAGACGGTCAAACACACTTTGTTACAGAATTATATGTTGAAACTATAAAATTCATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCATAATATAGATAATCCTGACTTATTAGAAATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7U7PX14

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

93.893

100

0.939

  ssb Staphylococcus aureus MW2

93.13

100

0.931


Multiple sequence alignment