Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FPV14_RS06920 Genome accession   NZ_CP042286
Coordinates   1444822..1445694 (+) Length   290 a.a.
NCBI ID   WP_047429582.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain B3-25B     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1439822..1450694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV14_RS06900 (FPV14_06900) sucC 1439935..1441101 (+) 1167 WP_001020805.1 ADP-forming succinate--CoA ligase subunit beta -
  FPV14_RS06905 (FPV14_06905) sucD 1441123..1442031 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  FPV14_RS06910 (FPV14_06910) - 1442259..1443377 (+) 1119 WP_047556672.1 LysM peptidoglycan-binding domain-containing protein -
  FPV14_RS06915 (FPV14_06915) fmhC 1443405..1444649 (+) 1245 WP_047429583.1 FemA/FemB family glycyltransferase FmhC -
  FPV14_RS06920 (FPV14_06920) dprA 1444822..1445694 (+) 873 WP_047429582.1 DNA-processing protein DprA Machinery gene
  FPV14_RS06925 (FPV14_06925) topA 1445868..1447943 (+) 2076 WP_072292005.1 type I DNA topoisomerase -
  FPV14_RS06930 (FPV14_06930) trmFO 1448099..1449406 (+) 1308 WP_000195261.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33543.94 Da        Isoelectric Point: 9.7188

>NTDB_id=376618 FPV14_RS06920 WP_047429582.1 1444822..1445694(+) (dprA) [Staphylococcus argenteus strain B3-25B]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDTYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
TALKYNLPTIAVLAFGHQTHYPKSTRALRNKIEEKGLVISEYPPHTPIARYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDILEDYFI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=376618 FPV14_RS06920 WP_047429582.1 1444822..1445694(+) (dprA) [Staphylococcus argenteus strain B3-25B]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGTAGAAAAAAAGATACTTATTTATGTGAATGGGTAAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
AAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATCGTTTCTGGGCTTGCACAAGGTGCAGATGCAATGGCACATCAA
ACAGCATTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACACGAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCGCATACACCAATTGCTAGATATAGATTTC
CAGAACGAAATAGAATTATCAGTGGGTTGTCAAAAGGGGTTCTAATAACAGAAGCTAAAGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAACAGAAATGTTTATGTTTTACCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTTTTAAACGCTAATGATATATTAGAAGATTACTTTATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

97.241

100

0.972
  dprA Staphylococcus aureus N315

96.897

100

0.969

Multiple sequence alignment