Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   FPV14_RS03530 Genome accession   NZ_CP042286
Coordinates   761796..762365 (+) Length   189 a.a.
NCBI ID   WP_047557176.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain B3-25B     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 756796..767365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV14_RS03505 (FPV14_03505) cysE 758009..758656 (+) 648 WP_072291959.1 serine O-acetyltransferase -
  FPV14_RS03510 (FPV14_03510) cysS 758640..760040 (+) 1401 WP_031787937.1 cysteine--tRNA ligase -
  FPV14_RS03515 (FPV14_03515) - 760033..760437 (+) 405 WP_047430424.1 Mini-ribonuclease 3 -
  FPV14_RS03520 (FPV14_03520) rlmB 760445..761191 (+) 747 WP_047557179.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FPV14_RS03525 (FPV14_03525) - 761191..761715 (+) 525 WP_000664733.1 NYN domain-containing protein -
  FPV14_RS03530 (FPV14_03530) sigH 761796..762365 (+) 570 WP_047557176.1 sigma-70 family RNA polymerase sigma factor Regulator
  FPV14_RS03535 (FPV14_03535) rpmG 762481..762624 (+) 144 WP_014373786.1 50S ribosomal protein L33 -
  FPV14_RS03540 (FPV14_03540) secE 762680..762862 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  FPV14_RS03545 (FPV14_03545) nusG 762875..763423 (+) 549 WP_001288299.1 transcription termination/antitermination protein NusG -
  FPV14_RS03550 (FPV14_03550) rplK 763604..764026 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  FPV14_RS03555 (FPV14_03555) rplA 764234..764926 (+) 693 WP_001074615.1 50S ribosomal protein L1 -
  FPV14_RS03565 (FPV14_03565) rplJ 765198..765698 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  FPV14_RS03570 (FPV14_03570) rplL 765742..766110 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  FPV14_RS03575 (FPV14_03575) - 766298..766906 (+) 609 WP_000020309.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23032.01 Da        Isoelectric Point: 9.5837

>NTDB_id=376611 FPV14_RS03530 WP_047557176.1 761796..762365(+) (sigH) [Staphylococcus argenteus strain B3-25B]
MKRCISVHNNVEKHSNIVDDNEFEKLITDLKPLIIRRMKRFGFKYHDLEDLYQEILIKIYRATKTFDFKGEQPFVNYVQC
LITSVKYDYLRKCLASSRRMDSLVNEYKVIYPCALKYHDIERNYLNKLNVRELICQFKYLSAFEKEVMYFICDQYKPREI
AQLMNVKEKTIYNAIQRCKSKIRQHFKMF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=376611 FPV14_RS03530 WP_047557176.1 761796..762365(+) (sigH) [Staphylococcus argenteus strain B3-25B]
TTGAAAAGATGTATATCAGTGCATAATAATGTTGAAAAACACAGCAATATAGTTGACGATAATGAATTTGAAAAGTTAAT
AACAGATTTGAAACCATTAATCATTCGACGTATGAAAAGGTTTGGTTTTAAATACCATGATTTGGAAGATTTATATCAAG
AGATACTAATAAAGATATATAGGGCAACTAAAACATTCGATTTTAAAGGTGAGCAACCATTCGTGAATTATGTTCAATGT
TTAATCACTTCAGTTAAATACGATTATCTAAGGAAGTGTCTAGCATCTTCTAGAAGAATGGATAGTTTAGTAAATGAATA
TAAAGTTATATATCCTTGTGCATTAAAGTATCATGACATTGAAAGAAACTATTTAAATAAACTGAATGTCAGAGAGTTGA
TTTGTCAATTTAAATATTTAAGTGCATTTGAAAAAGAAGTAATGTATTTTATATGCGACCAATATAAACCAAGAGAGATT
GCCCAATTGATGAATGTTAAAGAAAAAACTATTTATAATGCAATTCAACGGTGTAAAAGTAAAATAAGACAGCATTTTAA
AATGTTTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

69.149

99.471

0.688
  sigH Staphylococcus aureus MW2

68.085

99.471

0.677

Multiple sequence alignment