Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FQV73_RS11320 Genome accession   NZ_CP042271
Coordinates   2346148..2346837 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain LPL061     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2341148..2351837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQV73_RS11285 - 2341346..2341828 (-) 483 WP_003151394.1 flagellar protein FlgN -
  FQV73_RS11290 flgM 2341843..2342109 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  FQV73_RS11295 - 2342179..2342598 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  FQV73_RS11300 comFC 2342672..2343361 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  FQV73_RS11305 - 2343367..2343651 (-) 285 WP_003151389.1 competence protein ComFB -
  FQV73_RS11310 comFA 2343709..2345094 (-) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  FQV73_RS11315 - 2345202..2346050 (-) 849 WP_043867471.1 DegV family protein -
  FQV73_RS11320 degU 2346148..2346837 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FQV73_RS11325 degS 2346914..2348077 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  FQV73_RS11330 - 2348300..2348947 (+) 648 WP_043867472.1 YigZ family protein -
  FQV73_RS11335 - 2348952..2350166 (+) 1215 WP_043867473.1 LCP family protein -
  FQV73_RS11340 - 2350256..2351332 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=376551 FQV73_RS11320 WP_003219701.1 2346148..2346837(-) (degU) [Bacillus velezensis strain LPL061]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=376551 FQV73_RS11320 WP_003219701.1 2346148..2346837(-) (degU) [Bacillus velezensis strain LPL061]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment