Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   FQV73_RS11300 Genome accession   NZ_CP042271
Coordinates   2342672..2343361 (-) Length   229 a.a.
NCBI ID   WP_196769287.1    Uniprot ID   -
Organism   Bacillus velezensis strain LPL061     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2337672..2348361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQV73_RS11265 fliW 2337763..2338194 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  FQV73_RS11270 - 2338224..2338793 (-) 570 WP_024085861.1 DUF6470 family protein -
  FQV73_RS11275 flgL 2338884..2339801 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  FQV73_RS11280 flgK 2339813..2341330 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  FQV73_RS11285 - 2341346..2341828 (-) 483 WP_003151394.1 flagellar protein FlgN -
  FQV73_RS11290 flgM 2341843..2342109 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  FQV73_RS11295 - 2342179..2342598 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  FQV73_RS11300 comFC 2342672..2343361 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  FQV73_RS11305 - 2343367..2343651 (-) 285 WP_003151389.1 competence protein ComFB -
  FQV73_RS11310 comFA 2343709..2345094 (-) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  FQV73_RS11315 - 2345202..2346050 (-) 849 WP_043867471.1 DegV family protein -
  FQV73_RS11320 degU 2346148..2346837 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FQV73_RS11325 degS 2346914..2348077 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25265.91 Da        Isoelectric Point: 8.4880

>NTDB_id=376549 FQV73_RS11300 WP_196769287.1 2342672..2343361(-) (comFC) [Bacillus velezensis strain LPL061]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKSAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=376549 FQV73_RS11300 WP_196769287.1 2342672..2343361(-) (comFC) [Bacillus velezensis strain LPL061]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAATCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment