Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPB8_RS05810 Genome accession   NC_014256
Coordinates   1203175..1203579 (-) Length   134 a.a.
NCBI ID   WP_000599159.1    Uniprot ID   -
Organism   Helicobacter pylori B8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1198175..1208579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB8_RS05785 (HPB8_1224) recJ 1198926..1200476 (+) 1551 WP_000810776.1 single-stranded-DNA-specific exonuclease RecJ -
  HPB8_RS05790 (HPB8_1225) - 1200476..1201372 (+) 897 WP_001117136.1 RluA family pseudouridine synthase -
  HPB8_RS05795 (HPB8_1226) - 1201505..1202065 (-) 561 WP_000037134.1 hypothetical protein -
  HPB8_RS05800 (HPB8_1227) - 1202049..1202387 (-) 339 WP_000699916.1 hypothetical protein -
  HPB8_RS05805 (HPB8_1229) - 1202575..1203117 (-) 543 WP_000892212.1 tetratricopeptide repeat protein -
  HPB8_RS05810 (HPB8_1230) dprB 1203175..1203579 (-) 405 WP_000599159.1 Holliday junction resolvase RuvX Machinery gene
  HPB8_RS05815 (HPB8_1231) dprA 1203576..1204376 (-) 801 WP_000835251.1 DNA-processing protein DprA Machinery gene
  HPB8_RS05820 (HPB8_1232) minE 1204383..1204616 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HPB8_RS05825 (HPB8_1233) minD 1204613..1205419 (-) 807 WP_001019050.1 septum site-determining protein MinD -
  HPB8_RS05830 (HPB8_1234) ilvC 1205443..1206435 (-) 993 WP_001207748.1 ketol-acid reductoisomerase -
  HPB8_RS05840 (HPB8_1235) - 1206684..1207466 (+) 783 WP_001168242.1 NAD+ synthase -
  HPB8_RS05845 (HPB8_1236) - 1207463..1208401 (+) 939 WP_000833945.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15226.77 Da        Isoelectric Point: 8.8525

>NTDB_id=37654 HPB8_RS05810 WP_000599159.1 1203175..1203579(-) (dprB) [Helicobacter pylori B8]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=37654 HPB8_RS05810 WP_000599159.1 1203175..1203579(-) (dprB) [Helicobacter pylori B8]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGACT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.727

98.507

0.963

Multiple sequence alignment