Detailed information    

insolico Bioinformatically predicted

Overview

Name   addA   Type   Machinery gene
Locus tag   FQZ25_RS27855 Genome accession   NZ_CP042270
Coordinates   2309092..2309277 (+) Length   61 a.a.
NCBI ID   WP_346726393.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain GA-A07     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2304092..2314277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQZ25_RS12075 (FQZ25_12085) - 2304165..2304758 (+) 594 WP_000347517.1 TVP38/TMEM64 family protein -
  FQZ25_RS12080 (FQZ25_12090) lepB 2304815..2305378 (+) 564 WP_000751919.1 signal peptidase I -
  FQZ25_RS12085 (FQZ25_12095) addB 2305495..2309010 (+) 3516 WP_060852344.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  FQZ25_RS27855 (FQZ25_12100) addA 2309092..2309277 (+) 186 WP_346726393.1 UvrD-helicase domain-containing protein Machinery gene
  FQZ25_RS12095 (FQZ25_12105) addA 2309246..2312734 (+) 3489 WP_152305257.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FQZ25_RS12100 (FQZ25_12110) - 2312747..2313034 (+) 288 WP_086692702.1 RNA polymerase alpha subunit C-terminal domain-containing protein -
  FQZ25_RS12105 (FQZ25_12115) gerPF 2313172..2313387 (-) 216 WP_001141566.1 spore germination protein GerPF -
  FQZ25_RS12110 (FQZ25_12120) - 2313430..2313816 (-) 387 WP_000902324.1 spore germination protein GerPE -
  FQZ25_RS12115 (FQZ25_12125) gerPD 2313832..2314026 (-) 195 WP_001052807.1 spore germination protein GerPD -

Sequence

Protein


Download         Length: 61 a.a.        Molecular weight: 6645.83 Da        Isoelectric Point: 11.0468

>NTDB_id=376504 FQZ25_RS27855 WP_346726393.1 2309092..2309277(+) (addA) [Bacillus thuringiensis strain GA-A07]
MLVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKKPNRRSVRKGIN

Nucleotide


Download         Length: 186 bp        

>NTDB_id=376504 FQZ25_RS27855 WP_346726393.1 2309092..2309277(+) (addA) [Bacillus thuringiensis strain GA-A07]
ATTTTAGTTGCTGCTGCAGCTGGATCAGGTAAAACAGCAGTATTAGTTGAACGTATTATTAAAAAGATTATTAATGAAGA
GAACCCAGTCGATGTCGACCGCCTGCTCGTTGTAACATTTACGAATGCAGCAGCACAAGAGATGAAAAAACCGAATCGGA
GAAGCGTTAGAAAAGGTATTAATTGA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(1-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addA Bacillus subtilis subsp. subtilis str. 168

83.673

80.328

0.672

Multiple sequence alignment