Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPB8_RS00295 | Genome accession | NC_014256 |
| Coordinates | 62716..63291 (+) | Length | 191 a.a. |
| NCBI ID | WP_001203595.1 | Uniprot ID | K2JY70 |
| Organism | Helicobacter pylori B8 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57716..68291
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPB8_RS00270 (HPB8_52) | uvrD | 58407..60452 (+) | 2046 | WP_000505301.1 | DNA helicase UvrD | - |
| HPB8_RS00275 (HPB8_53) | flgA | 60449..61105 (+) | 657 | WP_000697649.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPB8_RS00280 (HPB8_54) | - | 61115..61678 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| HPB8_RS00285 (HPB8_55) | coaD | 61678..62151 (+) | 474 | WP_001169256.1 | pantetheine-phosphate adenylyltransferase | - |
| HPB8_RS00290 (HPB8_56) | tmk | 62153..62728 (+) | 576 | WP_000289050.1 | dTMP kinase | - |
| HPB8_RS00295 (HPB8_57) | comFC | 62716..63291 (+) | 576 | WP_001203595.1 | ComF family protein | Machinery gene |
| HPB8_RS00300 (HPB8_58) | - | 63324..65363 (+) | 2040 | WP_001147711.1 | class I SAM-dependent DNA methyltransferase | - |
| HPB8_RS08725 | - | 65360..66575 (+) | 1216 | Protein_56 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21324.87 Da Isoelectric Point: 8.6712
>NTDB_id=37646 HPB8_RS00295 WP_001203595.1 62716..63291(+) (comFC) [Helicobacter pylori B8]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=37646 HPB8_RS00295 WP_001203595.1 62716..63291(+) (comFC) [Helicobacter pylori B8]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCTAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCTAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.751 |
100 |
0.361 |