Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   G9P52_RS20285 Genome accession   NZ_CP050047
Coordinates   4222786..4223523 (-) Length   245 a.a.
NCBI ID   WP_188027888.1    Uniprot ID   -
Organism   Escherichia coli strain 90-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4217786..4228523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P52_RS20255 (G9P52_20260) yfiL 4217944..4218309 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  G9P52_RS20260 (G9P52_20265) aroF 4218519..4219589 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  G9P52_RS20265 (G9P52_20270) tyrA 4219600..4220721 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  G9P52_RS20270 (G9P52_20275) pheA 4220764..4221924 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  G9P52_RS20275 (G9P52_20280) pheL 4222023..4222070 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  G9P52_RS20280 (G9P52_20285) raiA 4222174..4222515 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  G9P52_RS20285 (G9P52_20290) comL 4222786..4223523 (-) 738 WP_188027888.1 outer membrane protein assembly factor BamD Machinery gene
  G9P52_RS20290 (G9P52_20295) rluD 4223658..4224638 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  G9P52_RS20295 (G9P52_20300) yfiH 4224635..4225366 (+) 732 WP_023486560.1 purine nucleoside phosphorylase YfiH -
  G9P52_RS20300 (G9P52_20305) clpC 4225496..4228069 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27802.37 Da        Isoelectric Point: 6.4874

>NTDB_id=376442 G9P52_RS20285 WP_188027888.1 4222786..4223523(-) (comL) [Escherichia coli strain 90-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPSSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=376442 G9P52_RS20285 WP_188027888.1 4222786..4223523(-) (comL) [Escherichia coli strain 90-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAGCAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371

Multiple sequence alignment