Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   FQU71_RS04365 Genome accession   NZ_CP042254
Coordinates   800019..800723 (-) Length   234 a.a.
NCBI ID   WP_404809672.1    Uniprot ID   -
Organism   Legionella longbeachae strain B3526CHC     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 795019..805723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQU71_RS04340 (FQU71_04340) prmC 795112..795918 (-) 807 WP_150865690.1 peptide chain release factor N(5)-glutamine methyltransferase -
  FQU71_RS04345 (FQU71_04345) prfA 795911..796999 (-) 1089 WP_012978819.1 peptide chain release factor 1 -
  FQU71_RS04350 (FQU71_04350) hemA 796983..798257 (-) 1275 WP_080619832.1 glutamyl-tRNA reductase -
  FQU71_RS04355 (FQU71_04355) - 798633..798920 (+) 288 WP_003632971.1 hypothetical protein -
  FQU71_RS04360 (FQU71_04360) - 798932..799996 (+) 1065 WP_150865695.1 RIP metalloprotease -
  FQU71_RS04365 (FQU71_04365) comFC 800019..800723 (-) 705 WP_404809672.1 ComF family protein Machinery gene
  FQU71_RS04370 (FQU71_04370) bioC 800761..801618 (+) 858 WP_150865698.1 malonyl-ACP O-methyltransferase BioC -
  FQU71_RS04375 (FQU71_04375) - 801805..802578 (-) 774 WP_150865700.1 LirA/MavJ family T4SS effector -
  FQU71_RS04380 (FQU71_04380) - 802718..803599 (-) 882 WP_150865702.1 polyprenyl synthetase family protein -
  FQU71_RS04385 (FQU71_04385) - 803592..803810 (-) 219 WP_003632964.1 exodeoxyribonuclease VII small subunit -
  FQU71_RS04390 (FQU71_04390) radA 803986..805338 (+) 1353 WP_003632963.1 DNA repair protein RadA -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 27014.74 Da        Isoelectric Point: 9.2988

>NTDB_id=376323 FQU71_RS04365 WP_404809672.1 800019..800723(-) (comFC) [Legionella longbeachae strain B3526CHC]
MRQKIWSLTQSLRIYSICILCKQYHNDKMAVCSHCIELMPLLGPDCHHCAYPLPDTQFLVCGHCIKNPPSFDRTFIKYTF
EEPLRTLLHQFKYHNGLYLTSFLSYLIFKSLSSQAEMPQCLIPVPMHPQRIKRRGFNQAAILARSLAKKFKLPCDLFSCQ
KTLNTKPQAGLDEKQRKINLRSAFITHQLPYQHVAIIDDLLTTGNTANELAYTLKKSGVKQVDVWCCARTIEKH

Nucleotide


Download         Length: 705 bp        

>NTDB_id=376323 FQU71_RS04365 WP_404809672.1 800019..800723(-) (comFC) [Legionella longbeachae strain B3526CHC]
GTGCGTCAAAAAATATGGAGTTTAACACAAAGTTTACGTATATACTCAATATGTATCTTATGTAAACAATACCACAACGA
TAAAATGGCGGTATGTTCACATTGCATTGAACTCATGCCTTTGTTAGGTCCTGATTGTCACCATTGTGCTTATCCCTTAC
CAGATACCCAATTTCTCGTCTGTGGGCATTGTATTAAAAATCCACCCTCTTTTGACCGCACATTCATTAAGTATACTTTT
GAAGAACCCTTGCGTACCCTTTTACACCAATTCAAATATCATAATGGTCTTTATCTTACTTCATTTCTAAGCTATTTAAT
TTTTAAATCACTATCAAGCCAAGCGGAAATGCCTCAATGTTTGATCCCTGTCCCCATGCATCCACAACGAATTAAACGGC
GTGGATTTAACCAAGCAGCCATCTTGGCTCGTTCTTTAGCTAAAAAATTTAAACTCCCGTGCGATTTATTCAGTTGTCAA
AAAACGCTCAACACCAAACCGCAAGCCGGATTAGATGAAAAACAAAGAAAAATAAATTTACGTTCAGCCTTTATTACACA
CCAACTACCCTATCAACATGTTGCCATTATCGATGATCTACTAACCACCGGTAATACGGCAAATGAACTGGCGTACACTT
TAAAGAAATCTGGAGTGAAACAGGTGGATGTTTGGTGTTGCGCACGCACCATAGAGAAACACTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

58.974

100

0.59
  comFC Legionella pneumophila strain ERS1305867

59.694

83.761

0.5

Multiple sequence alignment