Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FP568_RS02255 Genome accession   NZ_CP042219
Coordinates   477506..479011 (-) Length   501 a.a.
NCBI ID   WP_369798653.1    Uniprot ID   -
Organism   Pandoraea pnomenusa strain TF-18     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 472506..484011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP568_RS02225 (FP568_02225) mutY 472523..473692 (+) 1170 WP_145862811.1 A/G-specific adenine glycosylase -
  FP568_RS02230 (FP568_02230) rapZ 473726..474598 (-) 873 WP_023872989.1 RNase adapter RapZ -
  FP568_RS02235 (FP568_02235) - 474779..475105 (-) 327 WP_145862812.1 PsiF family protein -
  FP568_RS02240 (FP568_02240) hprK 475259..476224 (-) 966 WP_023597764.1 HPr(Ser) kinase/phosphatase -
  FP568_RS02245 (FP568_02245) ptsN 476324..476779 (-) 456 WP_023597763.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FP568_RS02250 (FP568_02250) hpf 477016..477369 (-) 354 WP_023597762.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FP568_RS02255 (FP568_02255) rpoN/rpoN1 477506..479011 (-) 1506 WP_369798653.1 RNA polymerase factor sigma-54 Machinery gene
  FP568_RS02260 (FP568_02260) lptB 479088..479858 (-) 771 WP_028731000.1 LPS export ABC transporter ATP-binding protein -
  FP568_RS02265 (FP568_02265) lptA 479881..480579 (-) 699 WP_145862813.1 lipopolysaccharide transport periplasmic protein LptA -
  FP568_RS02270 (FP568_02270) lptC 480576..481235 (-) 660 WP_023597758.1 LPS export ABC transporter periplasmic protein LptC -
  FP568_RS02275 (FP568_02275) - 481260..481745 (-) 486 WP_223272185.1 HAD family hydrolase -
  FP568_RS02280 (FP568_02280) - 481853..482833 (-) 981 WP_023597756.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56062.15 Da        Isoelectric Point: 5.9083

>NTDB_id=376070 FP568_RS02255 WP_369798653.1 477506..479011(-) (rpoN/rpoN1) [Pandoraea pnomenusa strain TF-18]
MKARHAMKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERSTSA
SSASEGHESANGHDETRELDGQTRFDDSNQDSGSDWSLNDFARSGSASDDDDNARPQLHVDHPNLREHLLAQLRLTKAGP
RDRALVEFLIESLDEDGYLGTMLDEIQADMPEELALETEEINAALALLQSFDPAGVGARTPSECLRLQLQRLPPSNVRTL
SLRIVSDHLELLAARDYTRLRRLLGVSEDSLRAAHHLIRSLDPFPGAAYGSPQADYVVPDVLVRKQGSNWIAELNPEVMP
RLRINEMYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLG
LHESTISRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVAR
RTVAKYREAMRIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=376070 FP568_RS02255 WP_369798653.1 477506..479011(-) (rpoN/rpoN1) [Pandoraea pnomenusa strain TF-18]
ATGAAGGCGAGACACGCTATGAAACCGACTCTTCAACTCCGCACCTCGCAGCACCTGACCCTCACGCCGCAGTTGCAGCA
ATCCATCCGGTTGTTGCAACTGTCGACGCTCGAACTTCAGCAGGAAGTCGAGCACGCCCTCACCCAGAACCCGATGCTCG
AGCGCGAGGACGACTGGCTCGCGGGCTCGGTACGTGTCGGCACGGACGGGTCGCTTCGCAACGAGCGCAGCACGTCGGCG
AGCAGCGCCAGCGAGGGCCATGAGTCCGCCAACGGCCATGACGAAACCCGCGAGCTCGACGGCCAGACCCGCTTCGACGA
CAGCAACCAGGACAGCGGCAGCGATTGGAGTCTTAACGATTTCGCCCGTTCGGGCAGCGCCTCGGACGACGACGACAACG
CGCGCCCGCAGTTGCACGTCGATCACCCCAACCTTCGCGAACACCTGCTCGCGCAGCTGCGCCTGACCAAGGCAGGGCCG
CGCGATCGCGCGCTTGTCGAATTCCTGATCGAATCGCTCGACGAAGACGGCTACCTCGGCACCATGCTCGACGAAATCCA
GGCGGATATGCCTGAAGAGCTGGCGCTCGAGACCGAGGAGATCAACGCGGCGCTCGCGCTCCTGCAGAGCTTCGATCCGG
CCGGTGTGGGTGCCCGTACGCCGTCCGAATGCCTGCGCCTTCAGTTGCAGCGCCTGCCGCCGAGCAATGTGCGCACGCTC
TCGCTGCGCATCGTCTCGGATCACCTGGAACTGCTCGCCGCGCGCGATTACACGCGTTTGCGTCGCCTGCTCGGCGTGAG
CGAAGACAGCCTGCGCGCGGCGCATCACCTGATTCGCTCCCTCGACCCTTTCCCCGGCGCGGCCTACGGCTCGCCGCAGG
CCGATTACGTGGTGCCCGACGTGCTGGTGCGCAAGCAGGGCAGCAACTGGATCGCCGAACTCAACCCCGAGGTCATGCCG
CGACTGCGCATCAACGAGATGTACGCGCGAATTCTGCGAAACAACCGCAACGATCCGGGCACCGGCAATCTGCAGCAACA
GCTCCAGGAAGCCCGCTGGCTGATCAAGAACATCCAGCAACGGTTCGACACGATCCTGCGTGTCGCACAGGCGATCGTCG
AGCGTCAGAAGAACTTCTTCACGCACGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGT
TTACATGAATCCACGATTTCACGGGTGACAACCAGTAAGTACATGCTCACTCCATTCGGGACTTTCGAGCTCAAGTACTT
CTTTGGTTCGCACGTGGCCACGGAGGCGGGCGGCGCAGCGTCATCGACGGCCATCCGCGCACTCATCAAGCAACTCATAG
GAGCAGAAGACCCGCAGAGCCCCCTTTCCGACAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGGTTCGTGGTGGCGCGG
CGCACTGTCGCGAAGTACCGCGAGGCCATGCGAATCCCCGCAGTCAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(11-54)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(139-328)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.463

100

0.685

Multiple sequence alignment